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JX486088.1__AFU63165.1__8014-B2_0098__00098

Bact-Vir

JX486088.1__AFU63165.1__8014-B2_0098__00098

Identity

Accession:
JX486088 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Douglaswolinvirus› Lactobacillus_phage_ATCC_8014-B2

TaxID: 1225795

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 59-113
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.77 67.0 4.96e-01 100.0% 80.1%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 63.0 5.37e-01 100.0% 75.0%
3so6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 63.0 4.75e-01 100.0% 73.7%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 60.0 5.13e-01 100.0% 75.3%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 60.0 4.40e-01 100.0% 67.1%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.68 58.0 5.38e-01 100.0% 90.5%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.67 58.0 4.06e-01 100.0% 34.0%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 57.0 4.75e-01 98.2% 57.6%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.67 58.0 4.80e-01 100.0% 70.3%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 56.0 4.50e-01 100.0% 69.6%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.66 55.0 4.88e-01 96.4% 98.8%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.64 55.0 4.96e-01 100.0% 94.9%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 54.0 3.23e-01 92.7% 20.2%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.63 55.0 4.28e-01 100.0% 88.4%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.63 54.0 4.12e-01 100.0% 60.9%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.62 50.0 4.21e-01 100.0% 91.8%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.62 50.0 3.68e-01 100.0% 33.8%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.23e-01 100.0% 61.6%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 52.0 4.19e-01 100.0% 68.1%
2jeuA02 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.61 43.0 3.57e-01 78.2% 40.6%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.90e-01 100.0% 80.0%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 4.21e-01 100.0% 66.7%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.60 43.0 4.16e-01 100.0% 68.9%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.79e-01 100.0% 98.1%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 4.33e-01 100.0% 91.7%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.56 47.0 3.42e-01 100.0% 77.3%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.50e-01 100.0% 79.4%
3v0aB04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 44.0 3.38e-01 100.0% 91.7%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 45.0 4.03e-01 100.0% 76.5%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 4.00e-01 100.0% 86.8%
6gpkA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.52 42.0 3.37e-01 90.9% 45.0%
3zm6A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 40.0 2.78e-01 92.7% 52.0%
1yx3A01 3.30.1420.10 Alpha Beta › 2-Layer Sandwich › Dissimilatory Siroheme-sulfite Reductase; Chain: A; domain 1 › DsrC protein, N-terminal domain 0.51 34.0 3.80e-01 90.9% 95.1%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.67e-01 100.0% 58.7%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1851176 5092.1.1.0 ↗ beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins 0.76 52.0 3.89e-01 72.7% 97.8%
5059099 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.76 61.0 5.29e-01 94.5% 56.8%
3412723 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.75 66.0 4.96e-01 100.0% 67.4%
3834491 220.1.1.163 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.74 66.0 5.39e-01 100.0% 71.0%
3516854 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 64.0 5.06e-01 100.0% 71.3%
3410022 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.71 61.0 4.35e-01 100.0% 42.9%
3238801 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.70 60.0 3.58e-01 100.0% 15.3%
3734423 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 59.0 3.49e-01 92.7% 20.0%
3947081 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.70 59.0 5.73e-01 100.0% 98.4%
3593635 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 60.0 4.84e-01 100.0% 71.8%
5014250 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 48.0 4.31e-01 90.9% 51.2%
3601857 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 60.0 5.12e-01 100.0% 90.0%
3476139 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 60.0 4.73e-01 100.0% 59.1%
3252094 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 60.0 4.75e-01 100.0% 64.3%
3223396 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 58.0 4.65e-01 100.0% 72.2%
None — 0.68 58.0 3.29e-01 100.0% 10.5%
3337699 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.67 58.0 4.19e-01 100.0% 42.4%
7384 219.1.1.21 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.67 58.0 4.06e-01 100.0% 34.0%
3252821 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 60.0 4.76e-01 100.0% 66.4%
3247824 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 57.0 4.72e-01 100.0% 71.4%
3214387 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 59.0 5.01e-01 100.0% 80.0%
3266485 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 58.0 4.36e-01 100.0% 50.7%
3743890 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 56.0 4.21e-01 100.0% 49.7%
3855031 220.1.1.167 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29707 0.66 56.0 4.59e-01 100.0% 64.5%
5079258 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.66 47.0 5.00e-01 78.2% 93.3%
3272228 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 57.0 3.56e-01 100.0% 18.6%
3628889 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.66 57.0 3.63e-01 100.0% 23.2%
3800237 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 57.0 4.45e-01 100.0% 54.4%
3609378 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 56.0 4.79e-01 100.0% 76.8%
3913687 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 48.0 4.12e-01 100.0% 48.9%
3903728 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 57.0 4.73e-01 100.0% 74.0%
3920668 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.65 56.0 3.77e-01 100.0% 32.3%
3517377 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 48.0 4.17e-01 100.0% 51.8%
3786392 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 58.0 3.52e-01 100.0% 80.6%
3707723 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 56.0 4.58e-01 100.0% 68.6%
3709132 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 56.0 4.31e-01 100.0% 54.6%
5009939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 56.0 4.56e-01 100.0% 72.4%
3491895 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.64 53.0 4.51e-01 100.0% 70.0%
3608938 220.1.1.167 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29707 0.64 54.0 4.38e-01 100.0% 60.9%
3839750 2003.1.15.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Glycosyltransferase Maf N-terminal domain 0.64 46.0 3.14e-01 78.2% 48.1%
3719720 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.63 54.0 3.22e-01 100.0% 15.1%
3993013 5.1.4.90 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 0.63 55.0 3.40e-01 100.0% 30.6%
3226910 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.63 53.0 3.61e-01 100.0% 33.2%
3243587 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.62 53.0 3.34e-01 100.0% 23.2%
3509523 220.1.1.167 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29707 0.62 53.0 4.06e-01 100.0% 50.7%
3257543 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.62 53.0 3.70e-01 100.0% 36.9%
3918975 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 51.0 4.14e-01 100.0% 60.9%
3267948 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 52.0 2.83e-01 100.0% 7.1%
3924548 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 4.22e-01 100.0% 51.4%
4998507 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 47.0 4.74e-01 89.1% 90.7%
3575745 5.1.4.90 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 0.59 49.0 3.06e-01 100.0% 26.6%
5026901 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 47.0 4.60e-01 94.5% 83.3%
5083781 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 48.0 3.55e-01 100.0% 55.3%
3973152 5.1.5.9 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Cytochrom_D1 0.58 51.0 3.05e-01 100.0% 80.9%
4478186 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 40.0 4.24e-01 100.0% 100.0%
3261967 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 44.0 3.04e-01 100.0% 70.7%
3840033 2003.1.15.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Glycosyltransferase Maf N-terminal domain 0.53 44.0 3.12e-01 98.2% 47.0%