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JX495043.1__AFR52308.1__HMPREFV_HMPID9886gp0053__00048

Bact-Vir

JX495043.1__AFR52308.1__HMPREFV_HMPID9886gp0053__00048

Identity

Accession:
JX495043 ↗
Kingdom:
phage

Quality

94.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mechnikovvirus› Pseudomonas_phage_JBD67

TaxID: 1225793

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-124
PDB
Domain cluster: rep: KY249644.1__ARB05720.1__X__00030__D14-160
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.74 47.0 5.18e-01 98.2% 80.0%
8shiI01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 48.0 4.97e-01 100.0% 74.0%
7sjlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 40.0 4.35e-01 100.0% 72.8%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 36.0 3.90e-01 100.0% 63.4%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 42.0 4.49e-01 99.1% 79.4%
2lw6A00 2.60.320.40 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.61 38.0 4.33e-01 88.4% 86.3%
3fcgB00 2.60.40.3110 Mainly Beta › Sandwich › Immunoglobulin-like › Outer membrane usher protein 0.60 29.0 3.45e-01 98.2% 66.2%
4z18A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 4.36e-01 100.0% 74.6%
5f7uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 36.0 3.64e-01 100.0% 60.4%
5lf5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 43.0 4.31e-01 100.0% 75.0%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.53 31.0 3.41e-01 97.3% 71.9%
6sziB01 3.20.20.470 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glucansucrase 0.53 42.0 3.04e-01 88.4% 98.9%
5e5bA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.53 39.0 3.01e-01 77.7% 95.8%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.52 43.0 3.26e-01 88.4% 46.7%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 31.0 3.49e-01 97.3% 78.3%
4n8nA00 3.30.70.3040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 4.15e-01 99.1% 94.1%
4esnA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.51 34.0 3.90e-01 87.5% 98.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3906448 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.66 45.0 4.23e-01 100.0% 56.4%
4960210 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 36.0 3.95e-01 100.0% 67.8%
4987216 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 38.0 4.02e-01 100.0% 66.0%
3916835 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.62 40.0 4.24e-01 100.0% 74.7%
5018137 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.61 37.0 4.02e-01 100.0% 73.0%
4403433 11.1.1.11 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Usher 0.60 32.0 3.75e-01 100.0% 77.1%
3971552 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 30.0 3.69e-01 99.1% 75.7%
5032786 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 34.0 3.77e-01 100.0% 68.9%
4199516 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 37.0 3.86e-01 100.0% 66.7%
4004345 11.1.1.11 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Usher 0.59 30.0 3.67e-01 98.2% 75.7%
5068944 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.57 36.0 3.75e-01 100.0% 70.0%
3262240 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 4.15e-01 99.1% 76.0%
3596957 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 46.0 3.67e-01 100.0% 78.0%
3917491 331.4.1.5 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1_BRSK 0.52 46.0 4.37e-01 99.1% 88.1%
3653637 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.51 38.0 3.00e-01 79.5% 80.0%
3480951 60.1.1.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › SPOC 0.51 42.0 3.43e-01 89.3% 85.0%
D2 high residues 138-217
PDB
Domain cluster: rep: MT764845.1__QNN99762.1__P67b_00003__00003__D406-477