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JX507079.1__AFU62851.1__AcaML1_006__00006

Bact-Vir

JX507079.1__AFU62851.1__AcaML1_006__00006

Identity

Accession:
JX507079 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acidithiobacillus_phage_AcaML1

TaxID: 1229761

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 280-401
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.67 34.0 4.70e-01 80.3% 100.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 34.0 4.44e-01 95.1% 89.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 32.0 4.31e-01 98.4% 96.8%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 32.0 4.22e-01 100.0% 95.5%
3hxlA05 3.30.360.90 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › 0.60 34.0 4.43e-01 77.9% 100.0%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.57 34.0 3.89e-01 81.1% 80.9%
1n2bB02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.56 33.0 3.52e-01 81.1% 66.3%
2r5rA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.55 45.0 3.58e-01 86.9% 62.6%
3uoaB02 2.60.40.3360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 4.05e-01 80.3% 89.0%
3lmlA01 3.10.450.690 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 3.83e-01 82.0% 73.6%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.52 30.0 3.00e-01 84.4% 53.7%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.86e-01 82.0% 80.2%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.85e-01 79.5% 92.8%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3506907 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 39.0 4.25e-01 85.2% 62.0%
3222710 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 32.0 3.99e-01 83.6% 78.2%
4844428 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.58 30.0 3.80e-01 84.4% 82.7%
4083689 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.56 41.0 4.34e-01 87.7% 84.4%
3412171 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.55 43.0 2.81e-01 82.8% 22.9%
3979092 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.54 39.0 4.03e-01 83.6% 79.1%
5022920 11.1.1.1405 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mfa2 0.52 38.0 4.22e-01 80.3% 95.8%
3397499 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.93e-01 81.1% 90.8%
3395788 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 36.0 3.67e-01 82.0% 72.0%
4361074 230.1.1.5 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.52 37.0 3.98e-01 74.6% 90.5%
3842454 11.1.1.419 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3694 0.52 43.0 3.37e-01 91.0% 74.7%
3943569 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.51 39.0 3.53e-01 89.3% 58.8%
5050905 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.51 37.0 3.27e-01 76.2% 87.9%
3467783 11.1.1.558 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF6598 0.51 34.0 3.60e-01 75.4% 77.1%
3217531 11.1.1.419 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3694 0.51 40.0 3.69e-01 84.4% 97.5%
3468653 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 31.0 3.83e-01 77.9% 100.0%
4003909 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.50 44.0 3.93e-01 96.7% 72.0%
D2 high residues 417-512
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qyfA03 1.10.10.1690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236 0.81 45.0 5.55e-01 100.0% 86.9%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 27.0 3.25e-01 74.0% 57.8%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 28.0 3.72e-01 76.0% 83.3%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.59 28.0 3.58e-01 75.0% 77.8%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 30.0 3.37e-01 77.1% 65.8%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 31.0 3.65e-01 75.0% 86.2%
5hpzA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 39.0 3.27e-01 80.2% 91.4%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 36.0 3.30e-01 71.9% 94.7%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 26.0 3.13e-01 74.0% 72.1%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.51 31.0 2.43e-01 100.0% 27.2%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 28.0 3.26e-01 76.0% 75.0%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 25.0 3.13e-01 76.0% 80.0%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 27.0 3.32e-01 76.0% 86.0%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 39.0 2.78e-01 85.4% 46.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 31.0 3.47e-01 82.3% 80.8%
6lf2B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 37.0 3.42e-01 78.1% 97.6%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3835464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 33.0 3.76e-01 79.2% 80.0%
3340900 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 32.0 3.73e-01 77.1% 83.1%
3881121 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 34.0 3.36e-01 81.2% 59.0%
3830763 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 33.0 3.54e-01 79.2% 71.2%
4946882 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 24.0 3.03e-01 79.2% 67.3%
3359784 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 31.0 3.66e-01 77.1% 83.1%
3449268 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.99e-01 82.3% 83.5%
3828348 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 31.0 3.61e-01 76.0% 83.1%
3452043 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 34.0 3.03e-01 82.3% 44.4%
3230520 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 33.0 3.44e-01 82.3% 66.7%
3832128 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 34.0 3.43e-01 82.3% 64.2%
3547089 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 33.0 3.43e-01 82.3% 66.7%
3514906 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 32.0 2.62e-01 82.3% 30.5%
3924379 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 33.0 3.88e-01 93.8% 96.8%
3881111 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 33.0 3.43e-01 82.3% 67.8%
3577505 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 32.0 3.43e-01 82.3% 70.6%
3911241 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 33.0 3.28e-01 83.3% 61.0%
3315100 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 30.0 3.47e-01 78.1% 83.1%
3622055 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 31.0 3.33e-01 82.3% 68.2%
3226400 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 39.0 4.03e-01 85.4% 87.8%
4055256 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 32.0 3.36e-01 86.5% 67.8%
4003171 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 29.0 3.17e-01 76.0% 66.3%
3465976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 29.0 3.39e-01 78.1% 81.5%
3877938 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 33.0 3.41e-01 83.3% 68.9%
3561707 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 32.0 3.25e-01 83.3% 61.0%
3503815 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 31.0 3.30e-01 82.3% 68.2%
3629830 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 32.0 3.34e-01 81.2% 69.4%
3911238 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 32.0 3.37e-01 74.0% 70.6%
3535190 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 31.0 3.26e-01 81.2% 65.6%
3938389 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 32.0 3.35e-01 81.2% 70.6%
3535268 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 31.0 3.15e-01 82.3% 61.1%
3883161 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 32.0 3.31e-01 81.2% 67.8%
3501699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 32.0 3.46e-01 85.4% 77.5%
D3 high residues 528-635
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2czrA01 3.40.1350.70 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain 0.67 49.0 4.94e-01 92.6% 77.4%
2p14A00 3.40.91.50 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.66 60.0 5.01e-01 100.0% 76.3%
2vldA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.65 45.0 4.55e-01 71.3% 78.9%
3dorA03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.63 54.0 4.16e-01 96.3% 94.5%
1i74A02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.61 48.0 4.68e-01 84.3% 95.8%
3bamA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.61 42.0 3.46e-01 72.2% 52.9%
1t70A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.60 52.0 4.00e-01 96.3% 72.9%
2i2cA01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.58 40.0 3.89e-01 100.0% 61.6%
3rqiA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 47.0 4.47e-01 94.4% 77.2%
4l6wB01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.56 48.0 4.16e-01 95.4% 87.9%
1a04A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 48.0 4.60e-01 94.4% 85.5%
5khaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.56 44.0 3.43e-01 87.0% 74.6%
1bmtA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.56 50.0 4.41e-01 100.0% 74.1%
1on3B01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.55 47.0 3.71e-01 98.1% 80.3%
4fvaC00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.55 45.0 3.55e-01 91.7% 82.5%
2ookA00 3.40.50.10600 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SpoIIaa-like domains 0.55 42.0 4.07e-01 82.4% 94.4%
2vhhA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.55 49.0 3.47e-01 100.0% 47.2%
2i2xB02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.55 48.0 4.47e-01 98.1% 76.6%
5tdeA03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.55 46.0 3.89e-01 93.5% 72.0%
7r7eA01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.55 48.0 4.73e-01 100.0% 89.1%
1sbzD00 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.54 45.0 3.83e-01 91.7% 83.2%
1ylqA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 40.0 4.31e-01 85.2% 92.5%
8c5iA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.54 47.0 3.47e-01 100.0% 78.5%
3f6cA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 44.0 4.18e-01 94.4% 75.2%
3odpA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.53 42.0 3.57e-01 85.2% 61.5%
3v7nA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 42.0 3.46e-01 89.8% 86.4%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 43.0 3.63e-01 90.7% 82.6%
3b2nA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 43.0 4.18e-01 94.4% 82.5%
1r89A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 40.0 3.85e-01 85.2% 91.4%
2g6vA02 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.52 42.0 3.36e-01 88.9% 64.0%
4ftfA00 3.30.300.250 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.51 40.0 4.01e-01 100.0% 82.6%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4127413 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 56.0 5.69e-01 91.7% 82.9%
4954708 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 54.0 5.57e-01 85.2% 83.0%
4947992 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 58.0 5.81e-01 94.4% 83.6%
4971490 2008.4.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › TBP-interacting protein N-terminal domain-like › TBP-interacting protein N-terminal domain-like 0.72 59.0 5.95e-01 97.2% 88.2%
5067597 2008.4.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › TBP-interacting protein N-terminal domain-like › TBP-interacting protein N-terminal domain-like 0.70 59.0 5.91e-01 99.1% 90.0%
5046259 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.70 56.0 5.57e-01 93.5% 83.6%
4995284 2008.4.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › TBP-interacting protein N-terminal domain-like › TBP-interacting protein N-terminal domain-like 0.70 55.0 5.60e-01 90.7% 86.7%
4952288 2008.1.1.114 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 0.70 53.0 5.52e-01 88.0% 87.0%
4941784 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 49.0 4.50e-01 72.2% 76.3%
4640322 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 55.0 5.61e-01 96.3% 90.5%
5031046 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 51.0 5.26e-01 90.7% 86.4%
4088649 2008.1.1.141 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.66 51.0 5.29e-01 88.9% 88.9%
3322346 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.66 36.0 4.27e-01 75.0% 80.0%
3288683 2002.1.1.79 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF72 0.66 53.0 3.98e-01 86.1% 81.1%
2531407 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.65 50.0 3.69e-01 81.5% 61.3%
4089107 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 55.0 5.23e-01 97.2% 78.5%
4090404 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 51.0 5.12e-01 98.1% 82.7%
5000615 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 50.0 4.70e-01 82.4% 90.8%
5059469 2008.1.1.114 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 0.64 47.0 4.98e-01 85.2% 85.7%
5010590 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 48.0 4.94e-01 87.0% 84.8%
4958464 2008.1.1.205 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26915 0.62 50.0 4.88e-01 98.1% 79.2%
5078094 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 44.0 4.32e-01 74.1% 87.7%
4940782 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.61 49.0 4.82e-01 87.0% 81.7%
4997269 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 52.0 4.48e-01 95.4% 80.6%
4959341 2008.1.1.152 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2130 0.60 51.0 4.93e-01 94.4% 84.0%
5081250 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 50.0 4.75e-01 99.1% 79.2%
4953127 2007.1.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.59 46.0 4.10e-01 82.4% 66.7%
4983181 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 49.0 4.81e-01 98.1% 83.3%
3988527 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 42.0 4.45e-01 75.9% 89.5%
5040208 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 49.0 4.61e-01 99.1% 73.3%
4963143 2008.1.1.228 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5787 0.58 51.0 4.29e-01 98.1% 57.2%
4946707 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 49.0 4.80e-01 94.4% 86.1%
3607633 2008.3.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Eukaryotic RPB5 N-terminal domain › Eukaryotic RPB5 N-terminal domain 0.58 44.0 3.90e-01 81.5% 91.3%
5052494 246.3.1.10 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos_PGAP2IP 0.57 47.0 3.77e-01 91.7% 70.9%
1342866 2007.1.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.57 47.0 4.38e-01 97.2% 70.9%
3285731 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 48.0 4.37e-01 94.4% 89.7%
3703066 246.3.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.56 46.0 3.71e-01 90.7% 83.2%
4938079 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.55 39.0 3.46e-01 74.1% 98.1%
4995067 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.55 43.0 4.24e-01 84.3% 93.0%
3809926 2498.1.1.92 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF7906 0.55 48.0 3.66e-01 100.0% 94.4%
3596685 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.55 46.0 3.53e-01 92.6% 61.6%
3631776 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.55 44.0 3.71e-01 89.8% 94.4%
3284479 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.54 45.0 4.37e-01 100.0% 82.5%
11007 2008.1.1.8 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › BamHI 0.54 41.0 3.41e-01 81.5% 63.5%
4108240 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.54 41.0 3.03e-01 82.4% 74.6%
4978654 7574.1.1.0 ↗ a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) 0.54 47.0 3.76e-01 100.0% 73.5%
3592218 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.52 44.0 3.17e-01 94.4% 62.3%
4037091 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.51 40.0 3.96e-01 85.2% 95.7%
4035949 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.51 41.0 3.95e-01 88.9% 95.2%
3984005 129.1.1.51 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ADH_zinc_N 0.51 39.0 2.91e-01 81.5% 45.0%
3608691 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.51 43.0 3.17e-01 97.2% 59.4%
3724282 3676.1.1.0 ↗ alpha duplicates or obligate multimers › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain 0.51 39.0 2.78e-01 82.4% 67.8%
1030976 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.50 27.0 3.19e-01 99.1% 75.4%
D4 high residues 639-724
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l4mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 5.64e-01 87.2% 94.2%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 5.52e-01 73.3% 98.4%
3r4kB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 46.0 5.26e-01 90.7% 95.2%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 5.28e-01 90.7% 98.4%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.29e-01 93.0% 50.7%
3gwzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.30e-01 76.7% 68.5%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 41.0 4.13e-01 75.6% 66.3%
4d7kA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 4.05e-01 76.7% 63.5%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 4.46e-01 90.7% 84.9%
2xdvA03 3.90.930.40 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.60 49.0 4.59e-01 91.9% 70.9%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.59 31.0 3.64e-01 88.4% 72.4%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.59 32.0 3.44e-01 100.0% 58.7%
7vepA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 45.0 3.27e-01 89.5% 52.9%
3cxbA02 3.30.390.70 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Salmonella typhimurium protein 0.53 39.0 3.69e-01 79.1% 86.8%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.53 30.0 3.31e-01 100.0% 67.6%
4p79A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.52 39.0 3.15e-01 81.4% 77.9%
2ntxA01 1.20.58.2010 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 0.51 43.0 3.26e-01 94.2% 71.4%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4663712 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.72 49.0 4.59e-01 90.7% 58.1%
3961207 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.70 49.0 5.24e-01 93.0% 84.0%
3671762 101.1.2.37 ↗ alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.70 49.0 4.93e-01 90.7% 72.9%
3288595 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.69 48.0 5.23e-01 90.7% 88.6%
5056495 101.1.2.128 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.68 46.0 5.32e-01 89.5% 100.0%
5048345 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 49.0 4.75e-01 79.1% 68.4%
5053725 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 48.0 4.77e-01 97.7% 74.4%
4973736 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 47.0 4.97e-01 90.7% 86.7%
5079289 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 43.0 4.07e-01 74.4% 56.2%
3254031 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 44.0 4.69e-01 72.1% 82.7%
5048234 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 45.0 4.96e-01 91.9% 91.4%
3597290 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 57.0 5.18e-01 100.0% 85.0%
3789424 101.1.2.118 ↗ alpha arrays › HTH › HTH › winged helix domain › Dcc1 0.61 42.0 4.74e-01 90.7% 95.4%
4976712 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 4.17e-01 90.7% 68.9%
3740570 2.1.1.120 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis32-like_C 0.60 34.0 3.36e-01 100.0% 50.5%
5046225 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 3.82e-01 93.0% 44.1%
3737198 2.1.1.82 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_CSD1 0.58 36.0 3.77e-01 100.0% 67.5%
4980650 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.35e-01 93.0% 71.4%
3719810 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 47.0 4.61e-01 96.5% 96.8%
3651616 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.52 32.0 3.18e-01 82.6% 56.8%
3707397 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 36.0 2.32e-01 73.3% 33.1%
3715045 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.50 29.0 3.21e-01 80.2% 70.0%
D5 medium residues 1-139
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
152lA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.57 34.0 3.26e-01 97.1% 48.8%
4gr6B00 1.10.1200.210 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX 0.54 31.0 3.45e-01 97.1% 71.4%
4nt1A00 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.54 38.0 3.39e-01 71.9% 83.5%
4ymuD00 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.53 29.0 2.59e-01 71.2% 33.0%
4cthA02 1.10.1380.10 Mainly Alpha › Orthogonal Bundle › Neutral endopeptidase; domain 2 › Neutral endopeptidase , domain2 0.52 39.0 2.95e-01 79.9% 85.8%
3pm0A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 46.0 3.18e-01 95.7% 67.5%
1q90B00 1.20.810.10 Mainly Alpha › Up-down Bundle › Cytochrome Bc1 Complex; Chain C › Cytochrome Bc1 Complex; Chain C 0.52 37.0 3.27e-01 73.4% 75.5%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3735209 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.53 39.0 3.18e-01 77.0% 86.9%
D6 medium residues 140-276
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7zqiA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.70 43.0 3.96e-01 83.2% 47.2%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 31.0 4.21e-01 74.5% 98.6%
3h2gA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 43.0 3.39e-01 75.2% 68.1%
3efmA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.54 37.0 2.61e-01 70.1% 25.5%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 37.0 3.68e-01 71.5% 93.9%
4e6fA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.53 47.0 4.42e-01 97.1% 90.1%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.53 41.0 3.90e-01 82.5% 76.2%
1cbyA00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.52 40.0 3.45e-01 82.5% 70.5%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 40.0 4.02e-01 82.5% 85.1%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 36.0 3.71e-01 81.8% 78.1%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075730 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.81 65.0 7.05e-01 96.4% 100.0%
4997345 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.75 64.0 6.71e-01 100.0% 100.0%
5036533 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.67 56.0 4.76e-01 100.0% 54.7%
3377619 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.63 49.0 4.40e-01 82.5% 74.9%
331637 3435.1.1.1 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.62 58.0 4.39e-01 100.0% 54.2%
5043905 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.61 56.0 4.71e-01 100.0% 88.9%
5071965 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.61 37.0 4.35e-01 70.1% 86.3%
3322652 844.1.1.5 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.59 45.0 3.56e-01 78.8% 91.0%
3960716 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.58 37.0 3.95e-01 70.1% 74.8%
4991330 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.57 36.0 4.02e-01 73.7% 81.0%
3579468 71.1.1.21 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25897 0.55 42.0 3.52e-01 80.3% 84.3%
3334339 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.55 34.0 2.71e-01 79.6% 33.3%
3781274 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.54 42.0 3.07e-01 83.2% 90.7%
3609908 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 34.0 3.81e-01 71.5% 79.1%
5082214 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.54 37.0 4.10e-01 79.6% 90.5%
3797649 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 34.0 3.77e-01 78.8% 79.1%
3840079 4998.1.1.1 ↗ beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.53 42.0 4.07e-01 82.5% 86.0%
3717466 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.53 42.0 3.81e-01 85.4% 77.4%
3703231 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.53 44.0 4.11e-01 88.3% 92.7%
2755875 5084.5.3.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.52 36.0 2.45e-01 70.1% 32.4%
3194180 221.17.1.2 ↗ a+b two layers › beta-Grasp › C-terminal wheel domain of Cns1 › C-terminal wheel domain of Cns1 › BCD1 0.52 37.0 3.45e-01 73.0% 84.7%
4508852 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 35.0 3.82e-01 70.1% 91.3%
3739446 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.51 33.0 3.78e-01 71.5% 90.5%
3608162 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.51 42.0 4.02e-01 89.1% 92.1%
3559952 71.2.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.51 43.0 3.59e-01 92.7% 69.2%
4344452 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.50 38.0 3.19e-01 79.6% 86.1%
3481000 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 36.0 3.75e-01 73.0% 98.4%
3642420 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.50 36.0 3.54e-01 74.5% 94.0%