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JX507079.1__AFU62852.1__AcaML1_007__00007

Bact-Vir

JX507079.1__AFU62852.1__AcaML1_007__00007

Identity

Accession:
JX507079 ↗
Kingdom:
phage

Quality

95.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acidithiobacillus_phage_AcaML1

TaxID: 1229761

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-132
PDB
Domain cluster: rep: NC_054954__YP_010078073.1__KMC42-gp43__00043__D2-130
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13470.13 best PIN_3 38.6 2.50e-09 85.8% 98.3%
CATH (63)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v96A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.77 73.0 6.93e-01 100.0% 87.0%
2hwyA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.75 61.0 6.38e-01 100.0% 94.0%
1v8oH00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.75 67.0 6.56e-01 100.0% 89.0%
5k8jB00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.73 68.0 6.83e-01 99.2% 100.0%
4chgA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.73 68.0 6.71e-01 100.0% 100.0%
3tndA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.73 67.0 6.69e-01 100.0% 98.5%
2fe1A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.72 66.0 6.59e-01 97.6% 99.2%
3zvkA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.72 67.0 6.57e-01 100.0% 98.5%
2hwwB00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.71 66.0 6.14e-01 100.0% 89.8%
1w8iA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.71 65.0 6.12e-01 100.0% 85.7%
2f00A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.71 48.0 5.58e-01 98.4% 98.9%
4xgqA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.70 65.0 6.43e-01 100.0% 100.0%
3e61B01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 46.0 4.98e-01 100.0% 83.7%
1j1uA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.66 59.0 5.14e-01 100.0% 84.2%
6vr7A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 46.0 5.16e-01 100.0% 95.8%
1cozA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.65 53.0 5.37e-01 100.0% 87.3%
3i8oA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.65 60.0 5.99e-01 99.2% 98.4%
4nzpA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.65 55.0 5.34e-01 100.0% 82.6%
3p0hB02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.65 58.0 4.49e-01 100.0% 57.5%
2ixdA00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.64 59.0 4.79e-01 100.0% 91.8%
3we7A00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.64 58.0 4.53e-01 100.0% 82.0%
6lfzA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.63 58.0 4.66e-01 100.0% 78.8%
7va8A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.63 58.0 4.55e-01 100.0% 78.2%
1uanA00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.63 57.0 4.78e-01 100.0% 92.7%
3glvA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 53.0 5.45e-01 100.0% 95.1%
2xadA00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.62 56.0 4.48e-01 100.0% 95.8%
3pfnD01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.61 48.0 4.56e-01 100.0% 70.2%
2j4jF00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.61 56.0 4.59e-01 100.0% 93.8%
8inpA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.60 55.0 4.44e-01 100.0% 78.4%
3a2kA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 51.0 5.01e-01 97.6% 85.9%
1ep3B02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.59 47.0 4.91e-01 100.0% 93.2%
7c2xA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.58 53.0 4.11e-01 100.0% 75.7%
6znjB01 3.40.50.10950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 49.0 4.69e-01 90.6% 84.9%
3e58B01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 53.0 5.07e-01 100.0% 89.8%
3qp9D00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 53.0 3.58e-01 100.0% 37.0%
7w09A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.58 53.0 4.23e-01 100.0% 77.5%
4ycsA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 43.0 4.45e-01 100.0% 82.1%
4rxlA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 35.0 3.69e-01 100.0% 65.8%
1ig0A01 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.57 51.0 4.51e-01 100.0% 98.9%
3cr8C02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 47.0 4.12e-01 100.0% 60.1%
2g1uA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 46.0 4.56e-01 100.0% 83.9%
6tgvA01 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.54 49.0 4.43e-01 100.0% 91.3%
2yx6D01 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.54 37.0 4.06e-01 100.0% 86.3%
2f8lA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 47.0 3.87e-01 96.1% 88.8%
1jmvA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 49.0 4.78e-01 100.0% 95.7%
2zosB01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 49.0 4.54e-01 100.0% 95.0%
7vm0B01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 49.0 3.95e-01 100.0% 77.0%
2p6pB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 48.0 4.09e-01 100.0% 81.0%
4bgvA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 48.0 4.59e-01 100.0% 97.3%
2nqlA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.53 47.0 3.99e-01 100.0% 88.6%
1ytlA00 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.53 48.0 4.47e-01 100.0% 81.6%
4hjwA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 45.0 3.30e-01 96.1% 94.9%
1geqB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 46.0 3.81e-01 100.0% 95.1%
4nnaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 46.0 3.48e-01 100.0% 88.4%
1o94A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 3.91e-01 85.0% 75.0%
2wfbA00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.52 38.0 3.97e-01 100.0% 81.7%
2d4aD01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 47.0 4.56e-01 100.0% 99.3%
8k1fC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 43.0 3.79e-01 93.7% 83.7%
3h16B00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.51 43.0 4.22e-01 100.0% 83.9%
7cunK01 3.40.50.10890 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 44.0 4.05e-01 98.4% 88.4%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 45.0 3.55e-01 100.0% 88.4%
4e2oA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 44.0 3.30e-01 100.0% 87.7%
2ielA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 44.0 4.41e-01 100.0% 98.5%
ECOD (99)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3287635 2006.1.4.42 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_3, PF26343 0.99 97.0 8.27e-01 100.0% 68.6%
3277779 2006.1.4.36 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_3 0.94 91.0 7.73e-01 100.0% 69.8%
3277639 2006.1.4.24 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_12 0.84 78.0 6.45e-01 100.0% 95.3%
4934254 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.83 73.0 7.06e-01 92.1% 99.3%
5032569 2006.1.4.36 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_3 0.83 78.0 7.55e-01 100.0% 92.9%
4993144 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.83 78.0 7.72e-01 100.0% 99.2%
4994080 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.83 78.0 7.54e-01 100.0% 97.1%
5032530 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.83 77.0 7.46e-01 99.2% 99.3%
4938004 2006.1.4.36 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_3 0.82 76.0 7.42e-01 100.0% 91.9%
5079061 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.82 77.0 7.38e-01 100.0% 96.5%
3953611 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.82 76.0 7.39e-01 99.2% 100.0%
4968380 2006.1.4.36 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_3 0.82 76.0 7.54e-01 100.0% 96.2%
4983576 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.82 73.0 7.28e-01 94.5% 100.0%
5040944 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.82 76.0 7.48e-01 99.2% 98.5%
4967555 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.81 76.0 7.46e-01 99.2% 97.8%
5013586 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.81 76.0 7.28e-01 100.0% 95.2%
4966337 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.81 76.0 7.50e-01 100.0% 100.0%
5053452 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.81 74.0 7.26e-01 97.6% 98.5%
5014214 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.81 75.0 7.01e-01 100.0% 96.8%
5031031 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.80 76.0 7.44e-01 100.0% 97.0%
5077792 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.80 74.0 6.88e-01 100.0% 95.6%
3283928 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.80 75.0 7.41e-01 100.0% 100.0%
4968673 2006.1.4.36 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_3 0.80 74.0 7.02e-01 100.0% 90.7%
3956472 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.80 75.0 7.17e-01 100.0% 92.4%
4971956 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.80 74.0 6.92e-01 100.0% 98.1%
5070374 2006.1.4.36 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_3 0.80 75.0 7.24e-01 100.0% 92.9%
4967814 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.80 74.0 7.29e-01 100.0% 100.0%
4975834 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.80 75.0 7.36e-01 100.0% 100.0%
4966264 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.80 75.0 7.33e-01 100.0% 97.0%
5050889 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.79 74.0 7.40e-01 99.2% 98.5%
5013971 2006.1.4.36 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_3 0.79 74.0 6.59e-01 100.0% 88.6%
5077686 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.79 74.0 7.07e-01 100.0% 94.5%
4989833 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.79 62.0 6.33e-01 81.9% 96.0%
5038836 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.79 74.0 7.17e-01 100.0% 97.1%
5008181 2006.1.4.36 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_3 0.79 74.0 6.96e-01 100.0% 89.3%
5052068 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.79 74.0 7.31e-01 100.0% 97.7%
5060049 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.79 73.0 7.11e-01 99.2% 99.3%
5076794 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.79 73.0 6.76e-01 100.0% 94.3%
4984264 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.79 74.0 7.14e-01 100.0% 97.1%
5073896 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.79 72.0 7.15e-01 96.9% 99.2%
4977264 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.79 74.0 7.07e-01 100.0% 95.8%
4967517 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.79 74.0 7.36e-01 99.2% 100.0%
5032594 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.78 73.0 7.24e-01 100.0% 99.2%
4966974 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.78 73.0 7.27e-01 99.2% 100.0%
4984271 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.78 73.0 7.08e-01 100.0% 95.7%
5009857 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.78 73.0 7.28e-01 100.0% 97.7%
3954369 2006.1.4.43 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PF26343 0.78 48.0 4.82e-01 72.4% 60.8%
4927003 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.77 72.0 7.11e-01 100.0% 97.0%
3603453 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.77 72.0 6.83e-01 100.0% 94.0%
5010036 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.77 71.0 7.10e-01 98.4% 100.0%
5050003 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.77 72.0 7.06e-01 99.2% 99.3%
4997783 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.77 72.0 6.69e-01 100.0% 94.2%
5079347 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.77 71.0 6.71e-01 100.0% 96.7%
5054629 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.77 71.0 6.99e-01 100.0% 97.0%
5012865 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.76 70.0 6.71e-01 99.2% 98.6%
5074780 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.76 72.0 6.77e-01 100.0% 89.9%
5059447 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.76 71.0 6.87e-01 100.0% 96.4%
5074367 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.76 71.0 7.09e-01 100.0% 98.4%
5008164 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.76 71.0 6.68e-01 100.0% 98.0%
5081218 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.76 70.0 6.80e-01 100.0% 97.1%
4930771 2006.1.4.10 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 0.76 70.0 6.62e-01 100.0% 98.0%
4958103 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.76 67.0 6.84e-01 100.0% 96.8%
5009843 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.76 68.0 6.74e-01 96.9% 100.0%
3890777 2006.1.4.10 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 0.76 70.0 6.34e-01 100.0% 89.3%
5034969 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.75 70.0 6.11e-01 100.0% 85.8%
5040916 2006.1.4.50 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 0.75 70.0 6.20e-01 100.0% 72.4%
9936 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.75 67.0 6.62e-01 100.0% 91.7%
5009824 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.75 69.0 6.78e-01 99.2% 100.0%
5060902 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.75 69.0 6.91e-01 99.2% 98.5%
5052043 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.75 69.0 6.60e-01 100.0% 98.6%
5030568 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.74 69.0 6.40e-01 100.0% 96.8%
4592909 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.74 69.0 6.83e-01 100.0% 97.0%
5078327 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.74 68.0 6.76e-01 99.2% 97.7%
5062372 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.74 69.0 6.89e-01 100.0% 100.0%
4966881 2006.1.4.50 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 0.74 66.0 5.93e-01 100.0% 71.2%
5051956 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.74 68.0 6.73e-01 100.0% 100.0%
3655948 2006.1.4.10 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 0.74 68.0 6.00e-01 100.0% 79.4%
4938319 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.73 66.0 6.67e-01 95.3% 98.4%
5017995 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.73 66.0 6.72e-01 97.6% 100.0%
4970118 2006.1.4.50 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 0.73 67.0 6.00e-01 100.0% 72.6%
3956116 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.73 65.0 6.60e-01 96.9% 100.0%
5075633 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.71 65.0 6.55e-01 99.2% 99.2%
3520987 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.71 66.0 6.16e-01 100.0% 90.3%
3624522 2006.1.4.10 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 0.71 66.0 5.62e-01 100.0% 91.5%
3404976 2006.1.4.10 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 0.71 66.0 5.69e-01 100.0% 84.5%
5006226 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.71 64.0 6.34e-01 96.9% 100.0%
4129265 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.70 64.0 6.34e-01 97.6% 100.0%
2983816 7567.1.1.1 ↗ a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L 0.64 58.0 4.52e-01 100.0% 80.4%
4993282 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.64 58.0 5.59e-01 100.0% 88.3%
4082307 4978.1.1.1 ↗ a/b three-layered sandwiches › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › tRNA_deacylase 0.63 42.0 4.36e-01 100.0% 72.5%
5003943 2484.4.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.56 38.0 4.07e-01 100.0% 80.9%
5020876 2484.4.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.55 38.0 4.05e-01 100.0% 81.8%
3178646 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.55 49.0 4.37e-01 100.0% 77.8%
3294582 2003.6.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › HK 0.55 47.0 3.66e-01 94.5% 72.4%
4955067 2484.4.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.54 39.0 4.12e-01 100.0% 84.5%
4933684 2484.4.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.53 40.0 4.21e-01 100.0% 87.8%
4266271 2004.1.1.211 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P 0.52 47.0 3.76e-01 100.0% 74.5%
3195308 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 39.0 3.67e-01 85.8% 64.5%
139373 2484.4.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.52 38.0 3.97e-01 100.0% 81.7%
D2 high residues 137-189
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26343.1 best VapC50_C 68.3 5.10e-19 92.5% 87.3%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.20e-01 88.7% 51.8%
1cf7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.57e-01 100.0% 68.7%
1mw9X02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.63 52.0 3.84e-01 100.0% 49.1%
2v9vA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.62e-01 94.3% 84.1%
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.72e-01 96.2% 86.2%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 40.0 4.23e-01 96.2% 86.7%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.59 46.0 4.20e-01 88.7% 84.0%
3d5lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 4.50e-01 100.0% 97.8%
2vxzA02 1.10.10.1490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 45.0 4.02e-01 96.2% 73.6%
3dfgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 4.36e-01 98.1% 89.6%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 42.0 3.99e-01 96.2% 84.9%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.52 41.0 3.05e-01 98.1% 29.8%
3hjgA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 44.0 3.01e-01 100.0% 40.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948021 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 4.68e-01 94.3% 71.2%
4197338 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.63 47.0 4.80e-01 100.0% 90.0%
3267096 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.73e-01 94.3% 77.1%
4536531 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.62 46.0 4.72e-01 100.0% 90.0%
3519342 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.61 46.0 4.59e-01 94.3% 85.5%
4564250 103.1.1.67 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UPF0515 0.60 49.0 4.24e-01 98.1% 92.2%
5042947 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.59 44.0 4.50e-01 100.0% 94.0%
4672687 108.1.1.27 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.54 44.0 3.80e-01 94.3% 71.1%