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JX507079.1__AFU62865.1__AcaML1_0020__00020

Bact-Vir

JX507079.1__AFU62865.1__AcaML1_0020__00020

Identity

Accession:
JX507079 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acidithiobacillus_phage_AcaML1

TaxID: 1229761

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 53-83_105-171
PDB
Domain cluster: rep: LC644975.1__BCZ76046.1__X__00041__D80-114_131-189
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.94 56.0 6.96e-01 80.6% 92.3%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 54.0 5.25e-01 100.0% 61.9%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 45.0 5.00e-01 76.5% 70.0%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.78 51.0 5.23e-01 100.0% 69.1%
3m8jA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.70 51.0 5.30e-01 92.9% 83.3%
4qicC01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.70 49.0 4.43e-01 71.4% 88.0%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.70 51.0 4.45e-01 75.5% 89.4%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 42.0 4.94e-01 98.0% 93.9%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 47.0 4.38e-01 74.5% 65.0%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 40.0 4.43e-01 98.0% 80.3%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 46.0 4.50e-01 74.5% 77.4%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.62 57.0 4.98e-01 99.0% 96.5%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.62 46.0 4.21e-01 77.6% 58.0%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 43.0 3.75e-01 71.4% 74.7%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 42.0 4.21e-01 72.4% 75.7%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 38.0 4.35e-01 98.0% 88.7%
1lliA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 36.0 3.82e-01 100.0% 69.7%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.57 34.0 3.66e-01 100.0% 67.4%
6h5hA00 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.56 33.0 3.82e-01 76.5% 80.3%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 3.46e-01 70.4% 66.7%
1y7yA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 32.0 3.64e-01 94.9% 84.1%
6gyhA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 44.0 3.40e-01 96.9% 92.9%
3fhnA03 1.10.357.100 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Dsl1p vesicle tethering complex, Tip20p subunit, domain C 0.50 35.0 3.00e-01 74.5% 76.4%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4486973 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.89 59.0 6.35e-01 70.4% 77.6%
3289947 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.87 57.0 6.29e-01 81.6% 81.2%
3587538 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.87 56.0 6.68e-01 71.4% 94.1%
4396640 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.86 57.0 5.25e-01 77.6% 55.0%
4175748 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.85 53.0 5.89e-01 80.6% 77.5%
3286778 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.85 57.0 6.72e-01 78.6% 95.7%
4530655 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 55.0 5.50e-01 73.5% 66.0%
4202221 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.82 54.0 6.38e-01 70.4% 97.1%
4336182 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 67.0 6.96e-01 86.7% 94.4%
3587755 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.81 56.0 5.00e-01 70.4% 60.0%
3973360 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 51.0 5.95e-01 76.5% 88.6%
4160122 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.81 51.0 4.34e-01 73.5% 41.3%
3281471 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 52.0 5.75e-01 75.5% 80.0%
3972638 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 50.0 6.10e-01 76.5% 95.4%
3967748 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 58.0 6.17e-01 73.5% 97.6%
3972713 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 56.0 5.69e-01 71.4% 81.1%
4388780 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.79 49.0 4.25e-01 76.5% 42.8%
4862439 101.1.1.71 ↗ alpha arrays › HTH › HTH › Three-helical HTH › KORA 0.79 51.0 4.99e-01 99.0% 60.7%
2813289 101.1.1.71 ↗ alpha arrays › HTH › HTH › Three-helical HTH › KORA 0.78 49.0 4.98e-01 78.6% 63.9%
3587471 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.78 56.0 5.12e-01 73.5% 62.6%
4663875 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.78 52.0 3.82e-01 73.5% 27.5%
1810916 101.1.1.71 ↗ alpha arrays › HTH › HTH › Three-helical HTH › KORA 0.78 51.0 6.06e-01 99.0% 100.0%
None — 0.78 54.0 5.15e-01 99.0% 62.7%
3971149 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 50.0 5.55e-01 73.5% 81.2%
3284469 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 53.0 6.02e-01 73.5% 92.0%
4238054 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.77 51.0 3.74e-01 73.5% 26.9%
3288971 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.77 48.0 4.12e-01 80.6% 41.3%
4032673 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 51.0 3.73e-01 73.5% 26.9%
3959876 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 57.0 5.69e-01 87.8% 75.0%
None — 0.77 50.0 3.71e-01 70.4% 26.9%
3974736 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 48.0 5.10e-01 80.6% 72.9%
3977260 101.1.1.39 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Phage_antitermQ 0.75 62.0 5.83e-01 88.8% 91.7%
3961841 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.75 48.0 5.64e-01 76.5% 91.4%
4069056 101.1.1.22 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PapB 0.72 50.0 5.49e-01 87.8% 89.7%
4129689 101.1.1.22 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PapB 0.71 51.0 5.58e-01 88.8% 92.4%
5014197 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 55.0 5.59e-01 95.9% 83.2%
4618625 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 55.0 5.41e-01 95.9% 76.2%
4994369 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 54.0 5.63e-01 95.9% 87.8%
4034281 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 61.0 5.91e-01 94.9% 95.5%
3627888 101.1.1.64 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.70 55.0 5.02e-01 95.9% 64.0%
4456068 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 56.0 5.56e-01 93.9% 81.0%
3163616 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 51.0 5.27e-01 86.7% 78.7%
4317076 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 54.0 5.74e-01 99.0% 90.9%
5012037 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 55.0 5.74e-01 99.0% 90.0%
4982527 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 55.0 5.51e-01 99.0% 82.0%
2817645 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.69 52.0 5.69e-01 100.0% 95.0%
3964397 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.69 51.0 4.96e-01 87.8% 70.5%
4024517 101.1.1.64 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.68 54.0 5.13e-01 99.0% 71.3%
3821521 101.1.1.64 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.68 54.0 4.87e-01 99.0% 63.1%
3973709 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.68 55.0 5.40e-01 92.9% 79.0%
4059731 101.1.1.64 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.68 54.0 5.34e-01 99.0% 79.0%
4626741 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 52.0 5.34e-01 99.0% 86.3%
3738852 101.1.1.64 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.67 53.0 4.92e-01 99.0% 67.2%
3620216 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 50.0 5.38e-01 90.8% 92.9%
5011671 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 52.0 5.23e-01 99.0% 83.0%
4281319 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 52.0 5.13e-01 99.0% 79.0%
4990163 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 52.0 5.28e-01 99.0% 88.4%
5078044 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 52.0 5.08e-01 99.0% 80.0%
3182958 101.1.1.64 ↗ alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.62 55.0 4.90e-01 95.9% 74.1%
4577850 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.57 52.0 5.27e-01 100.0% 97.0%