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JX507079.1__AFU62885.1__AcaML1_0040__00040

Bact-Vir

JX507079.1__AFU62885.1__AcaML1_0040__00040

Identity

Accession:
JX507079 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acidithiobacillus_phage_AcaML1

TaxID: 1229761

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 41-111
PDB
Domain cluster: rep: KJ746502.1__AID18323.1__PPF1_10__00010__D77-132
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05354.18 best Phage_attach 43.0 8.20e-11 93.0% 61.6%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.81 56.0 5.94e-01 94.4% 81.0%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.75 46.0 5.60e-01 70.4% 100.0%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 53.0 4.96e-01 94.4% 64.4%
2p04A00 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.71 49.0 4.33e-01 73.2% 87.9%
4hh3A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.70 48.0 4.14e-01 71.8% 90.4%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.69 58.0 5.27e-01 97.2% 69.6%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.68 51.0 4.91e-01 91.5% 70.9%
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.68 60.0 5.04e-01 98.6% 59.1%
4g6iB01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.67 50.0 4.63e-01 97.2% 62.9%
4gj4D00 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.67 46.0 3.96e-01 73.2% 88.0%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.66 55.0 4.88e-01 88.7% 68.4%
3cb0D00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 58.0 4.39e-01 95.8% 64.0%
6baoA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 46.0 3.76e-01 77.5% 71.3%
2d69B01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.64 44.0 3.65e-01 71.8% 51.6%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.64 54.0 4.55e-01 97.2% 56.4%
3by9B01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 44.0 3.59e-01 71.8% 75.6%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 55.0 3.99e-01 95.8% 51.8%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 56.0 4.64e-01 97.2% 58.2%
3ub0A02 3.30.70.3540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nsp8 replicase, head domain 0.62 55.0 5.01e-01 95.8% 83.7%
2zzeA03 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 45.0 4.05e-01 93.0% 56.1%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 53.0 3.99e-01 97.2% 57.3%
2ahmH02 3.30.70.3540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nsp8 replicase, head domain 0.60 53.0 4.80e-01 95.8% 82.8%
2pliA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.60 43.0 4.07e-01 76.1% 97.6%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 51.0 3.36e-01 98.6% 22.4%
2gefA01 2.30.42.30 Mainly Beta › Roll › Pdz3 Domain › 0.59 41.0 3.59e-01 73.2% 85.7%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.59 50.0 4.13e-01 93.0% 92.0%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 48.0 3.78e-01 95.8% 63.4%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 32.0 3.43e-01 100.0% 62.3%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.58 50.0 4.34e-01 95.8% 74.3%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.58 49.0 4.28e-01 98.6% 62.2%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.57 49.0 4.24e-01 95.8% 72.6%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.56 48.0 4.34e-01 95.8% 72.0%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 43.0 4.15e-01 97.2% 75.9%
1v05A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.79e-01 98.6% 61.5%
3c8cB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 47.0 3.96e-01 100.0% 70.9%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 43.0 3.84e-01 94.4% 90.7%
2b9kA00 2.20.20.70 Mainly Beta › Single Sheet › Anthopleurin-A › 0.52 32.0 3.61e-01 88.7% 91.5%
3laeA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 43.0 4.12e-01 93.0% 97.5%
2p13A00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 42.0 3.99e-01 93.0% 95.3%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4092486 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.81 56.0 4.10e-01 100.0% 28.3%
4487049 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.81 56.0 4.12e-01 100.0% 29.1%
3058418 1.1.13.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.77 67.0 5.90e-01 94.4% 65.7%
3965594 1.1.13.53 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_3 0.76 62.0 5.58e-01 95.8% 65.3%
4395103 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 52.0 4.77e-01 93.0% 60.0%
3975275 1.1.13.15 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gifsy-2 0.71 58.0 5.24e-01 97.2% 65.3%
185291 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.69 52.0 5.02e-01 93.0% 71.2%
4215822 1.1.8.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel 0.69 48.0 4.84e-01 90.1% 72.9%
3469965 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.68 49.0 4.00e-01 77.5% 91.4%
5015084 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.68 48.0 5.20e-01 95.8% 88.3%
169594 1.1.13.14 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF3599 0.68 60.0 5.04e-01 98.6% 59.1%
4669352 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 57.0 4.90e-01 95.8% 59.1%
3258439 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 49.0 4.45e-01 98.6% 57.9%
4983682 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.67 59.0 4.66e-01 95.8% 70.7%
5042402 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.67 49.0 5.23e-01 93.0% 91.7%
2642578 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.66 59.0 5.04e-01 97.2% 66.4%
4956395 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.66 46.0 5.09e-01 95.8% 94.5%
5015989 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.65 44.0 4.92e-01 95.8% 92.7%
3384073 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 58.0 4.77e-01 97.2% 63.3%
4600813 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.61 48.0 4.16e-01 93.0% 54.5%
1309427 1.1.5.13 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S6 0.59 52.0 3.58e-01 98.6% 28.6%
3517676 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 52.0 4.35e-01 97.2% 71.7%
3946118 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 51.0 5.02e-01 94.4% 96.0%
5018825 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 40.0 3.50e-01 70.4% 77.3%
1016923 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.59 41.0 3.86e-01 74.6% 91.1%
4152219 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.58 51.0 4.21e-01 95.8% 56.0%
4159958 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.58 50.0 4.32e-01 95.8% 62.7%
4496370 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.57 50.0 4.12e-01 95.8% 55.2%
4421841 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 50.0 3.36e-01 100.0% 33.9%
4328622 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.57 49.0 4.18e-01 95.8% 60.0%
2716345 1.4.1.1 ↗ beta barrels › cradle loop barrel › N-terminal domain of poxin › N-terminal domain of poxin › Baculo_p26 0.57 47.0 3.70e-01 97.2% 42.1%
4552342 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.57 49.0 4.24e-01 95.8% 61.8%
2771876 1.1.16.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.56 39.0 3.46e-01 74.6% 49.6%
4358643 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.56 48.0 3.44e-01 97.2% 68.2%
4047545 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 47.0 3.75e-01 100.0% 58.7%
3969877 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 44.0 4.08e-01 91.5% 95.8%
2543664 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 47.0 4.43e-01 100.0% 100.0%
4960332 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.54 39.0 3.78e-01 78.9% 71.2%
4949049 3488.1.1.5 ↗ a+b three layers › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Cache_3-Cache_2 0.54 46.0 3.98e-01 97.2% 69.6%
3901366 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 46.0 3.03e-01 98.6% 38.5%
3873066 206.1.1.71 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.53 46.0 2.84e-01 95.8% 31.7%
4939371 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 40.0 3.51e-01 83.1% 87.8%
4184401 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 45.0 3.57e-01 98.6% 55.6%
1944061 11.1.1.279 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TarS_C1 0.52 41.0 3.41e-01 98.6% 45.0%
4944566 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 44.0 3.86e-01 98.6% 86.1%
185983 6012.1.1.1 ↗ few secondary structure elements › Antimicrobial peptide LCI › Antimicrobial peptide LCI › Antimicrobial peptide LCI › lci 0.52 32.0 3.61e-01 88.7% 91.5%
3234134 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 44.0 2.93e-01 97.2% 38.7%
3240933 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 45.0 2.88e-01 97.2% 34.6%
3789126 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 44.0 2.81e-01 97.2% 35.4%
3387865 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 38.0 3.51e-01 78.9% 77.9%
3213571 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.52 44.0 2.87e-01 97.2% 35.7%
5041140 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.51 40.0 3.77e-01 87.3% 90.0%
7157 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.51 42.0 3.99e-01 93.0% 95.3%
3625411 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.35e-01 97.2% 52.2%
3935905 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.42e-01 98.6% 56.2%
4496745 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.50 42.0 3.89e-01 91.5% 94.4%
3790784 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 41.0 2.90e-01 95.8% 46.8%
4398943 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.50 39.0 3.91e-01 94.4% 81.3%