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JX560521.1__AFU62285.1__phiAC-1_0036__00036
Bact-VirJX560521.1__AFU62285.1__phiAC-1_0036__00036
Identity
- Accession:
- JX560521 ↗
- Kingdom:
- phage
Quality
84.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-49
Domain cluster:
rep: MZ634349.1__UJD05724.1__PWKp18_00001__00001__D3-43
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2y30B01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 42.0 | 3.98e-01 | 87.2% | 55.2% |
| 2fyfA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 53.0 | 4.12e-01 | 97.9% | 76.2% |
| 3fogA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.62 | 50.0 | 4.10e-01 | 100.0% | 72.5% |
| 5d8cA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.59 | 43.0 | 3.25e-01 | 80.9% | 34.9% |
| 1sb7A02 | 3.30.2340.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, insertion domain | 0.59 | 46.0 | 3.54e-01 | 100.0% | 62.5% |
| 1j4aA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 47.0 | 3.24e-01 | 97.9% | 75.0% |
| 6lqfA01 | 1.10.150.60 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain | 0.58 | 47.0 | 3.81e-01 | 95.7% | 99.0% |
| 1jg1A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 48.0 | 3.16e-01 | 95.7% | 44.7% |
| 4lviA01 | 3.30.930.30 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › | 0.57 | 49.0 | 3.31e-01 | 100.0% | 38.7% |
| 1t3aA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.57 | 48.0 | 2.86e-01 | 100.0% | 12.7% |
| 2k3qA00 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.56 | 44.0 | 3.50e-01 | 97.9% | 77.1% |
| 2lcqA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.56 | 46.0 | 3.46e-01 | 95.7% | 43.1% |
| 3tbiB02 | 6.10.140.1670 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 47.0 | 3.77e-01 | 100.0% | 53.0% |
| 7febA03 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.52 | 42.0 | 3.39e-01 | 97.9% | 45.7% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3311239 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.68 | 50.0 | 3.80e-01 | 100.0% | 31.2% |
| 4270095 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.65 | 55.0 | 4.94e-01 | 100.0% | 72.9% |
| 3407482 | 102.1.1.114 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF26701 | 0.61 | 48.0 | 4.42e-01 | 91.5% | 90.8% |
| 5078902 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.61 | 49.0 | 3.18e-01 | 100.0% | 68.9% |
| 3833919 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.60 | 43.0 | 3.31e-01 | 100.0% | 32.7% |
| 3437143 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.60 | 44.0 | 4.46e-01 | 80.9% | 93.3% |
| 3226473 | 872.1.1.9 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › PF29479 | 0.60 | 43.0 | 3.42e-01 | 76.6% | 69.5% |
| 4191632 | 2003.1.2.38 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lycopene_cycl | 0.60 | 48.0 | 3.14e-01 | 100.0% | 60.4% |
| 3172655 | 170.2.1.26 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › TYA | 0.59 | 51.0 | 4.18e-01 | 100.0% | 57.8% |
| 3216589 | 226.1.1.4 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 | 0.58 | 43.0 | 2.97e-01 | 83.0% | 22.8% |
| 4109480 | 4168.1.1.0 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain | 0.57 | 40.0 | 3.99e-01 | 93.6% | 70.0% |
| 4323125 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.57 | 44.0 | 3.24e-01 | 87.2% | 91.5% |
| 3285453 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.57 | 43.0 | 3.55e-01 | 97.9% | 43.2% |
| 2759971 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.54 | 42.0 | 3.41e-01 | 95.7% | 44.0% |
| 4018838 | 601.1.2.114 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › FIT | 0.54 | 47.0 | 3.14e-01 | 100.0% | 95.8% |
| 3959727 | 4033.1.1.0 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like | 0.52 | 45.0 | 3.59e-01 | 100.0% | 56.0% |
| 4026623 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.50 | 43.0 | 2.85e-01 | 100.0% | 64.9% |
| 3957440 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.50 | 43.0 | 2.73e-01 | 100.0% | 18.8% |