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JX560521.1__AFU62307.1__phiAC-1_0058__00058
Bact-VirJX560521.1__AFU62307.1__phiAC-1_0058__00058
Identity
- Accession:
- JX560521 ↗
- Kingdom:
- phage
Quality
49.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 112-193
D2
medium
residues 194-256
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5unlB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.72 | 53.0 | 3.44e-01 | 77.8% | 27.5% |
| 1j09A05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.72 | 52.0 | 4.45e-01 | 76.2% | 63.3% |
| 1p94A00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.70 | 44.0 | 4.17e-01 | 77.8% | 52.6% |
| 2hl7A00 | 1.10.8.640 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Cytochrome C biogenesis protein | 0.63 | 46.0 | 4.28e-01 | 79.4% | 79.3% |
| 2d7eA01 | 3.40.1440.60 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain | 0.63 | 45.0 | 4.01e-01 | 76.2% | 87.8% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.61 | 49.0 | 4.29e-01 | 88.9% | 94.8% |
| 1qo0D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 41.0 | 4.52e-01 | 76.2% | 97.8% |
| 1ed1A00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.57 | 43.0 | 3.61e-01 | 84.1% | 67.5% |
| 4p17A02 | 1.10.8.270 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains | 0.57 | 49.0 | 4.15e-01 | 100.0% | 60.9% |
| 3tmgB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 44.0 | 3.36e-01 | 88.9% | 95.5% |
| 2pbiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 38.0 | 3.35e-01 | 73.0% | 59.6% |
| 4f78A01 | 3.30.200.180 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.52 | 34.0 | 2.92e-01 | 73.0% | 40.4% |
| 5ddtA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 44.0 | 3.04e-01 | 100.0% | 46.1% |
| 1h3mB00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.50 | 42.0 | 3.01e-01 | 100.0% | 89.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4054265 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.72 | 52.0 | 3.60e-01 | 76.2% | 59.5% |
| 3941449 | 101.1.11.42 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › ParD_like | 0.72 | 52.0 | 5.01e-01 | 84.1% | 68.6% |
| 4174559 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.68 | 51.0 | 3.77e-01 | 81.0% | 70.3% |
| 2081534 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.68 | 45.0 | 4.35e-01 | 77.8% | 60.0% |
| 4642619 | 301.8.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS | 0.66 | 52.0 | 3.95e-01 | 85.7% | 86.7% |
| 4254576 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.65 | 45.0 | 3.82e-01 | 71.4% | 90.0% |
| 4946063 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.64 | 42.0 | 4.44e-01 | 79.4% | 76.4% |
| 4083034 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.64 | 44.0 | 3.69e-01 | 71.4% | 87.3% |
| None | — | 0.57 | 47.0 | 2.91e-01 | 100.0% | 26.9% | |
| 5045263 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.54 | 42.0 | 3.93e-01 | 85.7% | 86.3% |