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JX560968.1__AFU62361.1__X__00030
Bact-VirJX560968.1__AFU62361.1__X__00030
Identity
- Accession:
- JX560968 ↗
- Kingdom:
- phage
Quality
82.7
mean pLDDT
Taxonomy
TaxID: 1229757
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 38-129
Domain cluster:
rep: IMGVR_UViG_2684622505_000002-2684622505-2684645365__D9-81
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06074.19 best | Portal_Mu | 35.4 | 1.10e-08 | 92.4% | 22.6% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kseA00 | 1.20.5.1040 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Sensor protein qsec. | 0.60 | 35.0 | 3.84e-01 | 76.1% | 68.8% |
| 1ji8A02 | 1.10.10.370 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DsrC protein, C-terminal domain | 0.58 | 25.0 | 2.96e-01 | 71.7% | 57.8% |
| 3biqA02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.55 | 39.0 | 2.82e-01 | 75.0% | 74.5% |
| 2e52B01 | 3.40.91.70 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Type II restriction endonuclease, HindIII | 0.51 | 38.0 | 2.90e-01 | 79.3% | 69.6% |
| 1vinA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 36.0 | 3.13e-01 | 72.8% | 70.5% |
| 6dewA01 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 42.0 | 3.37e-01 | 91.3% | 86.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1557492 | 4038.1.1.9 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › P23-45_portal_barrel | 0.82 | 68.0 | 6.43e-01 | 88.0% | 76.9% |
| 5039294 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.74 | 64.0 | 4.46e-01 | 93.5% | 81.1% |
| 4214015 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.59 | 37.0 | 3.47e-01 | 78.3% | 52.7% |
| 3975961 | 5058.1.1.88 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_TM1 | 0.50 | 37.0 | 3.66e-01 | 79.3% | 86.0% |