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JX564242.1__AFV51052.1__Q33_0023__00023

Bact-Vir

JX564242.1__AFV51052.1__Q33_0023__00023

Identity

Accession:
JX564242 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vedamuthuvirus› Lactococcus_phage_Q33

TaxID: 254253

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-83
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sr4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.77 57.0 4.10e-01 84.1% 29.3%
1hwmB02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.65 59.0 4.68e-01 100.0% 98.4%
2y9fA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 58.0 4.35e-01 100.0% 91.9%
2v4dE01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.58 45.0 4.17e-01 87.3% 71.4%
6scxC01 3.90.79.20 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › 0.58 45.0 3.42e-01 88.9% 73.8%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 3.98e-01 87.3% 83.7%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 40.0 2.92e-01 82.5% 82.9%
4issA03 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.51 37.0 2.92e-01 77.8% 72.3%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 40.0 2.50e-01 100.0% 14.7%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3457561 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.65 58.0 4.21e-01 100.0% 83.5%
3941411 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.61 47.0 3.59e-01 88.9% 71.2%
3971760 1.1.7.80 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.56 43.0 4.11e-01 90.5% 73.8%
3463367 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.54 33.0 3.07e-01 73.0% 45.9%
5054141 2.14.1.0 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like 0.53 34.0 3.70e-01 98.4% 82.0%