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JX569801.1__AFR52370.1__X__00058

Bact-Vir

JX569801.1__AFR52370.1__X__00058

Identity

Accession:
JX569801 ↗
Kingdom:
phage

Quality

92.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Connertonviridae› Fletchervirus› Campylobacter_phage_CP30A

TaxID: 1229752

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-103
PDB
Domain cluster: rep: IMGVR_UViG_3300037558_003019-3300037558-Ga0314846_0000342_25723_25998__D8-89
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6lfnA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.72 41.0 3.46e-01 85.1% 34.1%
3p7zA01 3.40.525.10 Alpha Beta › 3-Layer(aba) Sandwich › Phosphatidylinositol Transfer Protein Sec14p › CRAL-TRIO lipid binding domain 0.63 53.0 4.58e-01 99.0% 58.5%
3k13A00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.61 50.0 3.67e-01 98.0% 31.8%
4d8tA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 38.0 3.71e-01 87.1% 57.8%
6ofuA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 44.0 3.31e-01 95.0% 30.5%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 47.0 4.12e-01 86.1% 77.7%
3oy2A02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.59 42.0 3.32e-01 87.1% 33.2%
5dxfA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.58 44.0 3.52e-01 87.1% 39.6%
6tmvB01 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.58 48.0 4.09e-01 89.1% 73.1%
4qysA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 38.0 3.78e-01 74.3% 63.5%
3t5tA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.58 43.0 3.50e-01 87.1% 42.0%
5g0xA00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.57 50.0 3.48e-01 100.0% 36.2%
3l12B00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.57 49.0 3.58e-01 96.0% 51.2%
6r8gA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 40.0 3.58e-01 86.1% 52.1%
3p0rA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.57 48.0 3.94e-01 98.0% 81.2%
1bxgA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.56 44.0 4.03e-01 84.2% 80.0%
2d4aD01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 38.0 3.50e-01 89.1% 52.5%
2g7zA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 44.0 3.81e-01 86.1% 74.8%
1r30A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 48.0 3.41e-01 98.0% 33.0%
6f35A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 48.0 3.76e-01 99.0% 48.2%
4ag6A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 47.0 3.66e-01 100.0% 47.5%
2zejB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 43.0 4.32e-01 89.1% 87.1%
3ls9A02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 46.0 3.33e-01 99.0% 42.9%
1ekeA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 42.0 3.58e-01 86.1% 82.5%
1onwA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 46.0 3.47e-01 99.0% 44.7%
4ogzA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 46.0 3.37e-01 98.0% 44.5%
3kp1A01 3.20.20.440 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit 0.53 45.0 3.11e-01 100.0% 45.5%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 39.0 3.63e-01 87.1% 61.4%
2qkbA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 41.0 3.65e-01 86.1% 80.9%
4ei7A02 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.52 44.0 3.51e-01 99.0% 67.1%
1r0sA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 40.0 3.75e-01 87.1% 82.6%
6ilsA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 44.0 3.20e-01 99.0% 68.6%
2o3rA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 40.0 3.77e-01 86.1% 83.1%
1isiA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 39.0 3.70e-01 85.1% 82.0%
2q9uA02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.51 44.0 3.96e-01 98.0% 75.2%
3fg9C01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 40.0 3.63e-01 86.1% 62.1%
2dx7A01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 40.0 3.83e-01 87.1% 87.4%
3wy1A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 43.0 2.98e-01 99.0% 30.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5021923 2496.1.1.15 ↗ a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › DUF4325 0.81 68.0 7.01e-01 98.0% 93.7%
3483408 7524.1.1.0 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like 0.71 50.0 3.96e-01 85.1% 36.5%
3435216 2005.1.1.41 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C 0.65 45.0 3.76e-01 86.1% 41.1%
5060954 7524.1.1.0 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like 0.64 44.0 3.38e-01 88.1% 30.6%
4974663 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.62 45.0 3.42e-01 85.1% 33.0%
5060275 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.62 42.0 3.87e-01 85.1% 53.9%
4021476 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.61 46.0 3.58e-01 85.1% 37.2%
3269595 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.61 43.0 3.60e-01 99.0% 40.0%
4997440 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.61 42.0 3.89e-01 86.1% 55.4%
5037902 2002.3.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase 0.61 53.0 3.80e-01 96.0% 35.6%
2171605 7529.1.1.1 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.61 53.0 4.34e-01 100.0% 79.8%
None — 0.60 45.0 3.47e-01 86.1% 35.2%
4974956 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.59 42.0 3.41e-01 87.1% 37.9%
3481475 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 51.0 3.73e-01 95.0% 96.4%
4995471 7529.1.1.0 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like 0.59 52.0 4.43e-01 100.0% 90.6%
4945437 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.59 47.0 3.99e-01 86.1% 97.6%
1914070 7512.1.1.32 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 0.59 42.0 3.34e-01 87.1% 34.1%
3968146 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.58 51.0 4.19e-01 99.0% 59.5%
4927343 2002.3.1.2 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Polysacc_deac_1 0.58 48.0 3.60e-01 95.0% 36.4%
4989268 2007.22.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Methyl-viologen reducing hydrogenase subunit D › Methyl-viologen reducing hydrogenase subunit D › FlpD 0.58 45.0 4.00e-01 85.1% 62.0%
3719699 2006.1.6.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Ku_N 0.57 50.0 3.88e-01 100.0% 79.6%
3471602 2007.1.14.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase 0.57 45.0 3.58e-01 85.1% 55.2%
3494263 2007.1.14.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase 0.57 49.0 3.40e-01 99.0% 95.1%
4958034 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.57 40.0 3.18e-01 87.1% 34.4%
3898055 2007.1.14.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase 0.57 50.0 3.44e-01 98.0% 98.0%
3740966 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.57 43.0 3.44e-01 87.1% 40.0%
4870345 2002.1.1.76 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC 0.56 49.0 3.51e-01 98.0% 47.1%
5041912 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.56 49.0 3.43e-01 100.0% 40.0%
4397420 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.56 41.0 3.17e-01 86.1% 32.9%
3700072 3979.1.1.1 ↗ a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11_DNA_bind 0.56 43.0 4.41e-01 84.2% 98.0%
5078666 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.56 48.0 3.42e-01 100.0% 42.4%
3464908 2484.1.1.176 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.56 44.0 2.90e-01 86.1% 47.2%
4250050 2007.2.1.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_2 0.55 47.0 3.86e-01 98.0% 80.0%
4961826 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.55 38.0 3.58e-01 86.1% 57.6%
4966181 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.54 46.0 3.81e-01 94.1% 76.5%
4989827 2004.1.1.66 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 0.54 47.0 3.84e-01 100.0% 70.0%
4030910 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.54 47.0 3.68e-01 99.0% 89.8%
3918045 2004.1.1.118 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 0.54 45.0 2.76e-01 96.0% 21.3%
3503043 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.53 41.0 3.11e-01 93.1% 33.6%
4284801 2003.1.6.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.53 45.0 3.50e-01 99.0% 64.1%
5030958 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.53 46.0 3.19e-01 100.0% 42.7%
4186279 2007.1.14.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase 0.53 42.0 3.08e-01 90.1% 37.1%
3792624 2005.1.1.9 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DNA_photolyase 0.52 42.0 3.37e-01 89.1% 60.9%
3998869 2007.9.1.12 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TRAPPC10_1st 0.52 42.0 3.54e-01 91.1% 82.7%
2084583 2002.1.1.190 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF5696 0.51 44.0 3.07e-01 99.0% 42.1%
4032485 2004.1.1.45 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V 0.51 40.0 3.06e-01 98.0% 32.6%
3728046 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.51 43.0 3.36e-01 96.0% 63.3%
4028431 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.50 43.0 3.21e-01 99.0% 50.9%