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JX676771.1__AFV50639.1__AF_025__00025
Bact-VirJX676771.1__AFV50639.1__AF_025__00025
Identity
- Accession:
- JX676771 ↗
- Kingdom:
- phage
Quality
81.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-73
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4uy8X00 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.56 | 36.0 | 3.18e-01 | 71.2% | 44.2% |
| 3hslX00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.54 | 39.0 | 2.52e-01 | 80.8% | 34.1% |
| 2v5oA03 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.53 | 39.0 | 3.08e-01 | 88.5% | 69.6% |
| 3nybA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 37.0 | 3.00e-01 | 76.9% | 50.0% |
| 2xliA01 | 3.30.70.2540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 | 0.50 | 39.0 | 2.87e-01 | 94.2% | 29.5% |
| 2yfsA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.50 | 39.0 | 2.40e-01 | 100.0% | 73.8% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.50 | 36.0 | 2.45e-01 | 78.8% | 32.0% |
| 4yy8A02 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.50 | 41.0 | 2.65e-01 | 100.0% | 23.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3373479 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.61 | 49.0 | 3.25e-01 | 100.0% | 54.5% |
| 3364812 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 42.0 | 2.86e-01 | 86.5% | 23.0% |
| 5040906 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 36.0 | 3.92e-01 | 76.9% | 94.9% |
| 1263 | 10.5.1.3 ↗ | beta sandwiches › jelly-roll › Viral protein domain › Viral protein domain › Rota_Capsid_VP6 | 0.53 | 37.0 | 2.71e-01 | 76.9% | 74.5% |
| 4968628 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 37.0 | 3.99e-01 | 75.0% | 100.0% |
| 3994295 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 43.0 | 2.70e-01 | 100.0% | 50.8% |
| 3704465 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 41.0 | 2.78e-01 | 90.4% | 42.7% |
| 3650144 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 40.0 | 2.51e-01 | 100.0% | 45.0% |
| 3997815 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 40.0 | 2.43e-01 | 98.1% | 19.1% |
| 3512226 | 394.1.1.0 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins | 0.51 | 39.0 | 4.09e-01 | 82.7% | 97.8% |
| 3920668 | 220.1.1.12 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 | 0.51 | 39.0 | 2.70e-01 | 92.3% | 46.8% |
| 3497994 | 375.1.1.208 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-DNL | 0.50 | 37.0 | 3.79e-01 | 80.8% | 90.0% |
D2
high
residues 215-339
Domain cluster:
rep: OK041469.1__UDY80360.1__AXY1_49__00049__D132-220