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JX676771.1__AFV50646.1__AF_032__00032

Bact-Vir

JX676771.1__AFV50646.1__AF_032__00032

Identity

Accession:
JX676771 ↗
Kingdom:
phage

Quality

70.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-43
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 4.09e-01 76.7% 50.0%
4c9yA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.68 49.0 3.60e-01 79.1% 34.1%
2oqgB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 3.63e-01 76.7% 38.9%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 48.0 3.83e-01 76.7% 45.2%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 3.86e-01 76.7% 59.0%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 3.89e-01 79.1% 55.0%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 4.14e-01 79.1% 60.0%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 4.22e-01 90.7% 59.7%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 3.71e-01 79.1% 43.3%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 3.74e-01 81.4% 50.0%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 3.99e-01 81.4% 58.7%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 3.84e-01 81.4% 52.4%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 3.66e-01 81.4% 44.4%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 3.70e-01 81.4% 47.1%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 3.42e-01 81.4% 35.5%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 3.39e-01 74.4% 46.2%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 3.77e-01 74.4% 68.8%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.03e-01 90.7% 68.0%
3gs9A02 3.55.50.40 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.60 44.0 3.62e-01 86.0% 73.9%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 4.23e-01 95.3% 66.7%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.53e-01 81.4% 47.8%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.41e-01 76.7% 44.7%
6aeoB01 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.59 41.0 3.01e-01 76.7% 93.3%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.89e-01 93.0% 54.9%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 3.58e-01 81.4% 54.9%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.58 46.0 3.64e-01 93.0% 52.1%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.54e-01 76.7% 68.1%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.19e-01 76.7% 41.6%
3f6oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.37e-01 81.4% 45.1%
8a5eD01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 40.0 3.42e-01 81.4% 48.1%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.56 41.0 3.56e-01 90.7% 89.0%
1tozA02 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.56 35.0 3.06e-01 81.4% 34.2%
1a97B00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 41.0 2.88e-01 83.7% 82.4%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.25e-01 76.7% 48.8%
6n59A02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.64e-01 100.0% 77.4%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.53 40.0 2.41e-01 90.7% 49.5%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.52 36.0 3.14e-01 72.1% 71.4%
4kqeA03 3.30.720.200 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 36.0 3.15e-01 72.1% 64.7%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.52 37.0 2.98e-01 81.4% 50.5%
3r31A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.52 41.0 2.65e-01 100.0% 54.2%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.52 38.0 3.12e-01 86.0% 44.8%
7bkea01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 37.0 3.18e-01 79.1% 44.6%
3qphA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.18e-01 93.0% 45.4%
2d9iA00 3.30.1370.110 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 35.0 2.95e-01 81.4% 84.4%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.50 37.0 2.75e-01 81.4% 50.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5055105 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 49.0 4.26e-01 76.7% 47.1%
4969903 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.67 47.0 3.97e-01 76.7% 52.5%
4951629 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.67 49.0 3.96e-01 83.7% 49.5%
4939108 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 4.20e-01 76.7% 67.7%
4983293 101.1.2.128 alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.67 49.0 4.07e-01 83.7% 49.4%
5079818 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 47.0 3.79e-01 76.7% 46.7%
5029837 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 48.0 3.91e-01 79.1% 48.2%
4982760 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 48.0 4.24e-01 83.7% 60.0%
4981704 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 48.0 4.84e-01 86.0% 95.6%
5049424 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 45.0 3.22e-01 76.7% 33.1%
5080529 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.65 46.0 3.74e-01 81.4% 43.2%
4934550 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 46.0 2.96e-01 81.4% 16.7%
5037085 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 46.0 3.78e-01 81.4% 48.9%
5054801 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.63 44.0 3.60e-01 76.7% 46.7%
5069962 101.1.2.673 alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.63 47.0 4.21e-01 90.7% 65.7%
3464207 377.2.1.4 few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › Fpg-like_C 0.62 42.0 4.36e-01 81.4% 77.5%
4997094 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 43.0 3.45e-01 76.7% 45.0%
3571824 101.1.2.601 alpha arrays › HTH › HTH › winged helix domain › TBPIP, LZ3wCH 0.61 44.0 2.83e-01 76.7% 21.4%
3794506 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.61 45.0 2.98e-01 81.4% 21.5%
4027757 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.61 45.0 3.14e-01 86.0% 37.0%
5078709 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.61 43.0 3.39e-01 81.4% 34.5%
3973055 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 42.0 3.61e-01 76.7% 51.2%
5016433 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 3.66e-01 76.7% 48.0%
3401727 4.12.1.0 beta barrels › SH3 › Methuselah ectodomain › Methuselah ectodomain 0.60 37.0 2.79e-01 79.1% 21.7%
4950453 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.60 46.0 3.64e-01 93.0% 44.8%
4933483 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 3.51e-01 79.1% 57.6%
3773922 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.60 43.0 2.99e-01 76.7% 30.7%
3374769 101.1.2.601 alpha arrays › HTH › HTH › winged helix domain › TBPIP, LZ3wCH 0.59 41.0 2.71e-01 76.7% 21.4%
3370982 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.59 41.0 2.94e-01 76.7% 31.0%
3488598 101.1.2.601 alpha arrays › HTH › HTH › winged helix domain › TBPIP, LZ3wCH 0.59 41.0 2.79e-01 76.7% 22.1%
3492410 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.58 40.0 3.00e-01 76.7% 31.9%
5030237 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 3.94e-01 97.7% 53.8%
3344229 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.57 44.0 3.96e-01 88.4% 86.2%
4963142 101.1.2.908 alpha arrays › HTH › HTH › winged helix domain › DUF5787 0.57 42.0 3.63e-01 81.4% 50.7%
5065392 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.57 44.0 3.46e-01 93.0% 41.0%
4521030 3236.1.1.5 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_antiport_1 0.56 43.0 2.62e-01 97.7% 70.0%
3808247 101.1.2.164 alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 0.55 43.0 3.89e-01 93.0% 63.1%
3604204 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 37.0 2.52e-01 72.1% 77.2%
3379312 2005.1.1.41 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C 0.54 39.0 2.64e-01 86.0% 68.8%
4939103 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.54 38.0 3.38e-01 83.7% 54.7%
2833981 205.1.1.23 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Nqo3_Fer4 0.53 39.0 3.30e-01 83.7% 45.9%
3678569 109.4.1.2687 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28645 0.53 43.0 2.65e-01 93.0% 64.2%
3999724 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.54e-01 97.7% 72.2%
4971273 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.53 36.0 2.47e-01 72.1% 93.5%
1712158 205.1.1.42 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, Fer4_6, Fer4_7 0.53 42.0 3.58e-01 100.0% 75.0%
4986692 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.53 36.0 2.60e-01 72.1% 93.6%
5026412 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.53 36.0 2.58e-01 72.1% 96.6%
4979123 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.52 36.0 2.40e-01 72.1% 52.2%
3279128 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.52 37.0 3.37e-01 83.7% 52.9%
5032304 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.52 35.0 2.27e-01 95.3% 13.5%
4538071 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.52 37.0 3.04e-01 81.4% 46.7%
4973244 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.52 35.0 2.43e-01 72.1% 54.6%
4993775 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 40.0 3.82e-01 93.0% 89.1%
5037026 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.52 36.0 2.65e-01 74.4% 72.5%
4987428 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.52 35.0 2.43e-01 72.1% 56.4%
4983242 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.51 35.0 2.23e-01 95.3% 12.2%
2697 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.44e-01 97.7% 66.2%
2979310 205.1.1.23 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Nqo3_Fer4 0.51 36.0 3.13e-01 83.7% 65.5%
3369957 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.50 35.0 2.86e-01 72.1% 52.2%