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JX676771.1__AFV50657.1__AF_044__00044

Bact-Vir

JX676771.1__AFV50657.1__AF_044__00044

Identity

Accession:
JX676771 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-68
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g3oA00 3.20.100.30 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain 0.83 56.0 3.53e-01 70.7% 15.3%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.78 53.0 4.08e-01 70.7% 32.8%
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.76 53.0 4.59e-01 74.1% 49.4%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.75 62.0 3.72e-01 91.4% 24.6%
3iylU02 1.10.287.1520 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 50.0 5.15e-01 70.7% 77.4%
2g7zA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.73 59.0 4.25e-01 87.9% 91.6%
3lupA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.72 58.0 4.21e-01 87.9% 92.3%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.71 49.0 3.12e-01 72.4% 16.4%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.70 47.0 4.16e-01 70.7% 55.3%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 47.0 3.81e-01 70.7% 51.4%
7ymiD01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.68 55.0 3.83e-01 87.9% 79.4%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.67 56.0 3.53e-01 93.1% 59.5%
2ja9A02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.67 52.0 4.72e-01 89.7% 98.8%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 53.0 3.77e-01 86.2% 59.0%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.66 41.0 3.91e-01 98.3% 52.1%
5zjgA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.65 53.0 4.49e-01 98.3% 60.7%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.65 52.0 4.06e-01 91.4% 60.0%
4ottA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.65 56.0 4.48e-01 100.0% 50.4%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 50.0 3.69e-01 86.2% 50.3%
2y4tA02 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.62 42.0 4.47e-01 70.7% 84.6%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 38.0 3.06e-01 87.9% 33.0%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.62 46.0 2.91e-01 81.0% 24.0%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 41.0 3.98e-01 100.0% 61.2%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 3.79e-01 74.1% 50.6%
1r1dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 51.0 3.35e-01 93.1% 57.0%
3of4A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.60 54.0 3.63e-01 100.0% 39.1%
1j3eA00 1.20.1380.10 Mainly Alpha › Up-down Bundle › Replication modulator SeqA, C-terminal DNA-binding domain › Replication modulator SeqA, C-terminal DNA-binding domain 0.59 49.0 3.89e-01 91.4% 70.4%
8dvhB01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.58 47.0 3.39e-01 91.4% 74.9%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 38.0 3.59e-01 70.7% 56.8%
1u0mA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.57 39.0 2.92e-01 72.4% 35.6%
2kilA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.56 48.0 3.45e-01 100.0% 45.3%
3wxyA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 45.0 3.32e-01 91.4% 54.5%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.53 46.0 3.49e-01 98.3% 53.6%
2px7A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 42.0 3.00e-01 93.1% 69.5%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 41.0 3.14e-01 91.4% 35.3%
1t7lB01 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.52 42.0 2.69e-01 100.0% 33.9%
7yj5A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 40.0 3.07e-01 93.1% 34.2%
7uzsX02 3.90.260.10 Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like 0.51 44.0 2.86e-01 100.0% 51.7%
2uvaG01 1.20.1050.120 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 42.0 3.33e-01 100.0% 65.4%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 2.65e-01 100.0% 23.4%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4198887 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.94 64.0 5.10e-01 70.7% 39.0%
3479771 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.86 63.0 4.11e-01 100.0% 21.0%
3994704 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.83 56.0 5.41e-01 70.7% 63.1%
3439312 3209.1.1.1 a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e 0.83 56.0 4.77e-01 70.7% 45.6%
4426949 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.80 70.0 5.92e-01 98.3% 95.8%
5054777 327.11.2.13 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd 0.79 69.0 5.88e-01 98.3% 100.0%
4947065 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.77 66.0 5.69e-01 100.0% 96.8%
4024903 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.74 52.0 3.63e-01 74.1% 39.5%
3518991 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.74 49.0 4.53e-01 70.7% 53.3%
3999359 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.73 51.0 4.01e-01 74.1% 48.0%
3493263 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.73 51.0 3.20e-01 74.1% 27.6%
4593386 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.73 51.0 3.15e-01 72.4% 14.8%
3850399 3788.1.1.13 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › DMAP_binding 0.73 51.0 4.42e-01 74.1% 51.1%
3480610 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.73 51.0 4.78e-01 72.4% 60.0%
3757540 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.73 46.0 2.82e-01 70.7% 11.2%
3235626 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.72 64.0 3.90e-01 100.0% 16.7%
3326759 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.72 49.0 4.51e-01 70.7% 56.0%
5005237 4967.1.1.11 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › GIIM 0.72 50.0 3.63e-01 72.4% 28.1%
3494026 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.71 48.0 3.67e-01 70.7% 31.1%
4061485 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.70 48.0 3.41e-01 72.4% 26.3%
1683691 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.70 57.0 5.13e-01 96.6% 100.0%
3991544 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.69 45.0 3.70e-01 70.7% 38.0%
3242142 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.69 58.0 5.25e-01 100.0% 97.6%
3509762 311.1.1.2 a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Band_3_cyto 0.69 48.0 3.69e-01 100.0% 31.9%
3755193 4146.1.1.7 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › DMAP_binding 0.69 48.0 4.36e-01 74.1% 57.5%
4990233 4070.1.1.2 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.68 58.0 3.81e-01 98.3% 88.8%
5030079 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.68 56.0 3.23e-01 89.7% 62.2%
3684015 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.67 46.0 3.82e-01 70.7% 58.0%
3239115 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.67 46.0 2.79e-01 70.7% 11.9%
3921728 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 44.0 3.51e-01 70.7% 36.5%
3238459 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.64 55.0 5.30e-01 93.1% 84.6%
4927432 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.64 44.0 3.91e-01 70.7% 57.5%
3199096 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.63 54.0 3.56e-01 100.0% 52.3%
3404628 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.62 47.0 2.85e-01 79.3% 32.9%
4630575 230.3.1.1 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.62 43.0 3.48e-01 74.1% 36.0%
3213680 5001.1.1.66 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.62 50.0 3.17e-01 89.7% 32.0%
3463858 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 54.0 4.50e-01 96.6% 76.0%
3878697 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.61 50.0 3.09e-01 87.9% 31.3%
3216054 5001.1.1.66 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.61 44.0 2.86e-01 81.0% 30.7%
3571482 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.59 47.0 3.04e-01 93.1% 46.3%
3711095 3075.1.1.0 a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.59 54.0 4.90e-01 100.0% 84.0%
3966348 5058.1.1.16 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.59 47.0 4.25e-01 91.4% 85.9%
4996648 2006.1.4.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.59 38.0 2.79e-01 82.8% 23.3%
3922539 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.59 47.0 2.96e-01 86.2% 32.4%
4120017 230.3.1.1 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.58 51.0 3.90e-01 100.0% 84.3%
3901998 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 44.0 2.89e-01 89.7% 27.0%
5077975 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 3.49e-01 79.3% 64.8%
3591480 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.56 48.0 3.16e-01 96.6% 67.3%
3089187 563.1.1.0 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.56 44.0 3.10e-01 86.2% 52.9%
4336179 3322.1.1.1 alpha bundles › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › FAS_N 0.56 49.0 3.80e-01 100.0% 68.5%
3867833 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 45.0 2.83e-01 87.9% 34.2%
None 0.55 47.0 3.00e-01 100.0% 41.3%
4927100 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.54 41.0 3.65e-01 84.5% 67.8%
5022966 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.54 42.0 3.09e-01 89.7% 75.6%
4027757 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.54 38.0 2.68e-01 72.4% 40.6%
3420078 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.54 42.0 2.42e-01 96.6% 7.7%
4243497 7581.1.1.20 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_N+Chal_sti_synt_C 0.53 41.0 2.84e-01 93.1% 22.6%
3586965 304.48.1.48 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 0.53 47.0 3.81e-01 100.0% 78.2%
3223614 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.52 45.0 2.88e-01 96.6% 29.5%
3409994 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.50 38.0 2.45e-01 89.7% 27.0%