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JX676771.1__AFV50675.1__AF_062__00062

Bact-Vir

JX676771.1__AFV50675.1__AF_062__00062

Identity

Accession:
JX676771 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_AF

TaxID: 1235689

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-91
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j8bA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.75 34.0 3.41e-01 83.9% 42.4%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.60 32.0 3.31e-01 93.1% 56.8%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 39.0 3.38e-01 70.1% 94.3%
4dziB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 39.0 2.57e-01 77.0% 64.1%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 39.0 2.69e-01 79.3% 53.3%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.52 37.0 2.60e-01 73.6% 71.9%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 31.0 2.88e-01 71.3% 43.6%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 39.0 3.43e-01 81.6% 94.0%
3zlaD01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.51 38.0 3.46e-01 81.6% 71.4%
6vq6H01 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 45.0 3.45e-01 100.0% 67.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3647236 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 41.0 3.11e-01 85.1% 26.8%
4391637 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.62 41.0 4.12e-01 100.0% 66.7%
3496996 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 41.0 3.51e-01 74.7% 89.0%
4143468 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.58 39.0 3.94e-01 100.0% 67.8%
3289942 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 34.0 3.47e-01 73.6% 57.6%
3962103 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.57 43.0 4.03e-01 85.1% 65.7%
3701480 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.86e-01 86.2% 93.6%
3219161 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.54 37.0 3.50e-01 71.3% 95.5%
2167707 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.54 39.0 3.20e-01 78.2% 85.4%
4236240 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.54 40.0 3.86e-01 100.0% 69.5%
4567535 1203.1.2.0 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 0.53 45.0 3.12e-01 100.0% 27.7%
5046010 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 36.0 3.49e-01 71.3% 98.0%
5051250 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 39.0 3.52e-01 81.6% 96.2%
4139864 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.51 42.0 4.04e-01 100.0% 76.5%
4285664 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.51 38.0 3.55e-01 85.1% 64.8%
4960551 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 3.39e-01 83.9% 90.0%