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JX676771.1__AFV50679.1__AF_024__00024

Bact-Vir

JX676771.1__AFV50679.1__AF_024__00024

Identity

Accession:
JX676771 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_AF

TaxID: 1235689

Cluster

View cluster (41 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-124
PDB
Domain cluster: rep: BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00008__D242-335
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.79 66.0 6.89e-01 100.0% 96.6%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.74 63.0 6.51e-01 98.0% 97.8%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.73 63.0 6.54e-01 99.0% 100.0%
1qexA02 2.60.120.640 Mainly Beta › Sandwich › Jelly Rolls › gp9 0.72 65.0 6.41e-01 98.0% 94.2%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.70 63.0 6.13e-01 100.0% 88.1%
4v02C00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.66 53.0 4.95e-01 100.0% 69.7%
4knuA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.62 45.0 3.85e-01 75.5% 71.7%
1gff200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 4.01e-01 99.0% 76.3%
2pv0A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 45.0 3.60e-01 89.8% 67.6%
2pcnA00 3.50.30.40 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like 0.55 44.0 3.76e-01 86.7% 70.8%
2uxtA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.52 45.0 3.86e-01 98.0% 87.0%
3bgvD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 38.0 2.91e-01 80.6% 67.2%
1a4aA00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.52 40.0 3.73e-01 85.7% 89.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581337 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.73 64.0 6.55e-01 100.0% 100.0%
3963299 207.5.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.67 55.0 5.31e-01 100.0% 78.2%
2775473 12.6.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_95_C 0.60 48.0 5.12e-01 92.9% 98.8%
3266008 207.4.1.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C 0.58 52.0 4.10e-01 100.0% 53.7%
3665560 12.6.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_95_C 0.56 46.0 4.79e-01 99.0% 97.8%
4259464 2003.1.5.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ 0.55 48.0 3.91e-01 96.9% 79.5%
4063416 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 45.0 4.15e-01 92.9% 72.3%
4190563 2008.1.1.11 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA 0.51 43.0 3.74e-01 93.9% 76.1%