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JX865427.2__AFV51307.1__JL1_32__00032

Bact-Vir

JX865427.2__AFV51307.1__JL1_32__00032

Identity

Accession:
JX865427 ↗
Kingdom:
phage

Quality

75.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Dhillonvirus› Escherichia_phage_JL1

TaxID: 2681620

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-88
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.92 63.0 5.00e-01 70.5% 38.5%
4fwvA02 1.20.120.1680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 54.0 4.60e-01 76.1% 53.7%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4985493 3834.1.1.0 ↗ alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain 0.86 64.0 4.41e-01 76.1% 51.8%
5012473 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.81 57.0 5.23e-01 72.7% 71.8%
3497070 3722.1.1.0 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain 0.80 68.0 4.66e-01 90.9% 30.0%
3944731 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.78 65.0 5.12e-01 87.5% 66.7%
3252533 4177.1.1.8 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.69 48.0 3.52e-01 70.5% 28.8%