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JX871397.1__AFV29167.1__PHI80_27__00027

Bact-Vir

JX871397.1__AFV29167.1__PHI80_27__00027

Identity

Accession:
JX871397 ↗
Kingdom:
phage

Quality

93.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Enterobacteria_phage_phi80

TaxID: 10713

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-74
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06183.19 best DinI 74.0 1.40e-20 80.8% 93.7%
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ghhA00 3.30.910.10 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like 0.87 80.0 7.73e-01 100.0% 92.6%
4u5pA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.76 66.0 5.34e-01 97.3% 68.6%
2fltA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.72 63.0 5.47e-01 100.0% 81.2%
1mwwB00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.72 61.0 5.29e-01 97.3% 77.1%
8dqaA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.71 60.0 5.52e-01 97.3% 88.8%
6lkvA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.70 60.0 4.98e-01 97.3% 64.7%
2lc0A00 3.30.2320.60 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › FhaA, phosphopeptide-binding domain (DUF3662) 0.69 47.0 3.89e-01 71.2% 50.0%
3jzjA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.67 58.0 4.32e-01 100.0% 78.6%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 57.0 5.53e-01 98.6% 88.7%
4ei7B01 3.30.1330.190 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.65 46.0 3.69e-01 75.3% 46.3%
4r6hA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.64 56.0 4.39e-01 100.0% 87.7%
5mrvA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.64 55.0 3.66e-01 98.6% 35.5%
2hsnA01 3.40.30.170 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.63 33.0 3.74e-01 82.2% 67.9%
6b5kB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.62 53.0 3.71e-01 100.0% 79.3%
3pbkA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.62 51.0 4.53e-01 91.8% 63.0%
3ezjA03 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.62 44.0 4.86e-01 93.2% 100.0%
3dsaA01 3.40.1650.10 Alpha Beta › 3-Layer(aba) Sandwich › RbsD-like fold › RbsD-like domain 0.61 42.0 3.50e-01 71.2% 56.6%
1sw2A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 54.0 4.16e-01 100.0% 81.3%
2fa8B00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 50.0 4.69e-01 91.8% 74.7%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 46.0 4.72e-01 93.2% 89.9%
1pdaA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 48.0 4.26e-01 90.4% 98.2%
3i3vB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 50.0 3.93e-01 100.0% 91.7%
1bvp103 1.10.170.10 Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 3 › Bluetongue Virus 10, subunit 1, domain 3 0.58 43.0 3.96e-01 95.9% 61.5%
3gdwB00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.57 40.0 3.37e-01 75.3% 77.5%
3u40D00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.55 47.0 3.37e-01 100.0% 56.0%
4d02A02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.55 47.0 3.89e-01 100.0% 90.2%
2wawA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 46.0 3.50e-01 100.0% 94.9%
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.55 46.0 4.22e-01 94.5% 78.1%
1xgkA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.55 41.0 3.51e-01 80.8% 81.2%
1xg8A00 3.40.30.30 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Hypothetical protein sa0798. 0.54 44.0 3.92e-01 91.8% 79.6%
3ialA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 46.0 4.02e-01 100.0% 63.9%
4emeA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 44.0 3.00e-01 100.0% 30.9%
4v1ag00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 44.0 3.56e-01 93.2% 48.6%
2p6wA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 43.0 3.31e-01 100.0% 97.1%
6g62A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 44.0 3.81e-01 93.2% 66.1%
2yhaA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 45.0 3.24e-01 100.0% 83.4%
3hbjA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 44.0 3.12e-01 98.6% 77.6%
4joqA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 43.0 3.63e-01 100.0% 93.6%
3lkbA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 43.0 3.24e-01 100.0% 67.0%
2yv9A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 43.0 3.75e-01 90.4% 76.4%
8alzB05 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 3.15e-01 93.2% 82.0%
5l8sA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.93e-01 90.4% 86.0%
5a1nA00 1.20.1050.130 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 46.0 3.53e-01 100.0% 91.6%
8oh5B01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 41.0 3.84e-01 97.3% 69.4%
4pyrA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 43.0 3.36e-01 100.0% 71.3%
1on4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 41.0 3.24e-01 95.9% 70.1%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3978852 315.2.1.1 ↗ a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.95 87.0 8.44e-01 95.9% 95.0%
4937 315.2.1.1 ↗ a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.87 80.0 7.73e-01 100.0% 92.6%
4212654 315.2.1.1 ↗ a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.83 76.0 7.41e-01 100.0% 93.8%
4059350 315.2.1.1 ↗ a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.82 74.0 7.36e-01 100.0% 96.0%
3945722 315.2.1.1 ↗ a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.81 73.0 7.25e-01 100.0% 97.3%
4543273 304.36.1.1 ↗ a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.71 52.0 5.43e-01 86.3% 86.2%
4969054 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.71 60.0 6.00e-01 97.3% 90.7%
5033197 306.6.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.71 54.0 5.73e-01 93.2% 92.3%
5011184 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.70 53.0 5.61e-01 95.9% 92.3%
5058130 304.120.1.6 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.68 57.0 5.67e-01 94.5% 88.0%
5044181 304.117.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.68 54.0 5.45e-01 97.3% 85.3%
4000132 2011.1.1.12 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Nicastrin 0.68 58.0 3.72e-01 100.0% 30.8%
4988554 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 46.0 4.91e-01 94.5% 84.6%
3989329 315.1.1.0 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF 0.64 50.0 4.64e-01 84.9% 95.8%
4215083 304.48.1.10 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.64 55.0 4.54e-01 95.9% 57.7%
3244421 2485.1.1.34 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rdx 0.60 46.0 4.42e-01 91.8% 71.8%
4964054 2485.1.1.34 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rdx 0.60 47.0 4.72e-01 91.8% 84.0%
3208849 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.59 43.0 2.80e-01 76.7% 88.7%
4998604 7565.1.1.1 ↗ a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.59 49.0 3.98e-01 91.8% 76.4%
5013797 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.58 50.0 4.73e-01 100.0% 87.8%
3822274 2485.1.1.78 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Suc_Fer-like 0.58 45.0 3.86e-01 89.0% 74.6%
3221042 2485.1.1.108 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › PF29046 0.57 49.0 4.12e-01 100.0% 68.5%
4963846 2485.1.1.167 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › HTH_63 0.55 45.0 3.73e-01 91.8% 94.3%
4967544 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.55 47.0 3.42e-01 100.0% 88.0%
4449681 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 46.0 4.20e-01 100.0% 73.3%
3792259 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.54 45.0 3.27e-01 94.5% 85.9%
3474626 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 46.0 3.74e-01 100.0% 54.7%
3645849 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.54 43.0 3.22e-01 89.0% 66.2%
2116981 2008.1.1.66 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ArenaCapSnatch 0.53 41.0 3.03e-01 83.6% 61.9%
3224142 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.53 43.0 4.04e-01 90.4% 96.7%
3971957 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.53 44.0 3.04e-01 100.0% 82.3%
3247200 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.53 44.0 3.93e-01 98.6% 71.3%
4030171 2485.1.1.123 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › PF26962 0.52 42.0 3.82e-01 87.7% 65.0%
5074231 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 42.0 4.04e-01 87.7% 85.7%
3234932 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.52 44.0 3.84e-01 100.0% 73.3%
3581947 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.52 43.0 3.91e-01 93.2% 83.0%
4927988 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.52 40.0 3.11e-01 87.7% 71.8%
5051065 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.51 43.0 3.25e-01 100.0% 95.1%
4267950 2007.2.1.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_2 0.51 43.0 3.23e-01 100.0% 93.8%
3302807 10.12.1.17 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N 0.51 40.0 2.93e-01 86.3% 60.5%
4941088 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.51 43.0 3.18e-01 100.0% 86.0%
4026875 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 40.0 3.92e-01 87.7% 90.0%