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JX880034.1__AFV29051.1__IME11_2__00002

Bact-Vir

JX880034.1__AFV29051.1__IME11_2__00002

Identity

Accession:
JX880034 ↗
Kingdom:
phage

Quality

95.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-80
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.73 46.0 4.59e-01 72.2% 60.7%
2hljA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.69 53.0 4.45e-01 83.5% 93.4%
4rmmA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 49.0 4.09e-01 75.9% 72.6%
4kc5C03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.67 51.0 3.43e-01 81.0% 38.9%
3ir3A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.67 48.0 4.13e-01 75.9% 92.9%
2qwzA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 47.0 3.94e-01 73.4% 77.4%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.63 48.0 3.48e-01 83.5% 42.7%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.63 38.0 4.21e-01 72.2% 76.2%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 36.0 4.19e-01 86.1% 80.4%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 54.0 3.62e-01 100.0% 42.1%
4hkqA04 3.10.20.370 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.62 49.0 5.03e-01 92.4% 90.8%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 46.0 4.95e-01 98.7% 100.0%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 48.0 3.89e-01 84.8% 80.0%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.61 46.0 3.36e-01 83.5% 41.9%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.60 46.0 3.35e-01 83.5% 42.0%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.60 51.0 4.80e-01 94.9% 96.9%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.59 40.0 3.49e-01 70.9% 88.2%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 47.0 3.84e-01 92.4% 93.3%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 36.0 4.03e-01 72.2% 81.7%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 43.0 4.62e-01 97.5% 91.3%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 46.0 4.06e-01 89.9% 82.9%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.57 34.0 2.87e-01 70.9% 33.6%
3da8B00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.56 45.0 3.45e-01 91.1% 89.8%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 50.0 3.27e-01 98.7% 33.3%
2w7vA00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.56 38.0 3.83e-01 70.9% 78.0%
3gocA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.56 48.0 3.52e-01 97.5% 44.7%
4n4rB00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.56 49.0 3.98e-01 98.7% 81.5%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.55 48.0 4.09e-01 100.0% 75.9%
4n2kA01 2.60.40.1860 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, N-terminal domain 0.55 38.0 3.32e-01 70.9% 74.8%
2w35A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.55 47.0 3.43e-01 96.2% 58.7%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.79e-01 82.3% 88.6%
4iqfB01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.53 45.0 3.43e-01 98.7% 83.7%
2v94B00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 38.0 3.60e-01 74.7% 96.8%
2joxA00 2.60.40.4240 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill 0.53 44.0 4.02e-01 94.9% 68.9%
5optY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.37e-01 78.5% 76.4%
4qqsB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 44.0 3.07e-01 98.7% 34.2%
1fnfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.86e-01 83.5% 87.2%
4jklA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.90e-01 86.1% 92.6%
1jc4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 38.0 3.16e-01 96.2% 42.8%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.73e-01 93.7% 83.5%
3g16B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.35e-01 89.9% 65.8%
2iqiB00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.51 43.0 3.46e-01 100.0% 57.9%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 34.0 3.16e-01 70.9% 95.2%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.50 31.0 3.27e-01 91.1% 69.6%
5hl8C00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.50 34.0 3.47e-01 70.9% 78.5%
3p9xA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.50 42.0 3.30e-01 100.0% 90.3%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 41.0 3.37e-01 98.7% 48.1%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4098000 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.68 49.0 4.30e-01 82.3% 50.0%
3372466 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 49.0 5.02e-01 82.3% 84.0%
4010765 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.66 48.0 4.14e-01 81.0% 48.8%
4253671 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.65 49.0 3.93e-01 81.0% 41.3%
3221278 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 51.0 3.41e-01 96.2% 22.0%
4948163 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.64 53.0 3.86e-01 97.5% 32.7%
3592232 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 49.0 3.41e-01 83.5% 37.1%
4114495 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.64 49.0 3.63e-01 83.5% 45.2%
4416209 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.63 49.0 3.51e-01 83.5% 41.3%
3896020 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 43.0 3.91e-01 70.9% 71.4%
3269706 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 51.0 5.14e-01 96.2% 87.5%
4946845 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.63 46.0 3.25e-01 78.5% 34.1%
3574468 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 45.0 4.41e-01 74.7% 96.5%
5079533 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.62 49.0 3.54e-01 83.5% 40.5%
4152191 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.62 48.0 3.42e-01 83.5% 39.6%
4615629 4.1.1.449 beta barrels › SH3 › SH3 › SH3 › DUF1292 0.62 47.0 4.67e-01 96.2% 76.5%
4944954 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.62 48.0 3.52e-01 83.5% 44.2%
3429580 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.62 47.0 3.81e-01 83.5% 64.4%
5078933 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.62 48.0 3.53e-01 83.5% 45.2%
3259935 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.62 47.0 3.36e-01 83.5% 40.9%
5069545 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.62 48.0 3.56e-01 83.5% 46.3%
5083094 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.62 47.0 3.28e-01 81.0% 97.2%
3672774 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.62 47.0 3.74e-01 83.5% 44.1%
4124957 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.61 47.0 3.47e-01 83.5% 44.1%
3837099 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.61 46.0 3.31e-01 83.5% 40.0%
3413965 5.1.4.463 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_NWD2_C 0.61 54.0 3.43e-01 100.0% 31.0%
5044528 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.60 46.0 3.46e-01 83.5% 45.2%
3643562 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.60 46.0 3.30e-01 83.5% 41.2%
4017999 2003.1.2.29 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.60 44.0 2.69e-01 78.5% 87.4%
3742583 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.60 46.0 3.29e-01 83.5% 42.1%
3712993 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 48.0 4.92e-01 100.0% 93.3%
5041843 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.59 45.0 3.44e-01 83.5% 47.5%
3240591 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.59 51.0 3.63e-01 97.5% 44.4%
4230632 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 48.0 4.08e-01 89.9% 77.4%
3969015 7503.1.1.8 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF4136 0.59 48.0 4.09e-01 93.7% 97.1%
5057921 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.58 45.0 3.19e-01 83.5% 34.7%
3629599 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.58 41.0 3.78e-01 74.7% 74.3%
3549354 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 48.0 2.97e-01 98.7% 17.9%
5004589 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.56 49.0 4.44e-01 98.7% 92.7%
5037445 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.56 44.0 3.03e-01 83.5% 35.8%
3825504 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.56 47.0 4.52e-01 100.0% 82.2%
4028738 5.1.4.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel 0.56 49.0 3.26e-01 100.0% 33.7%
2330414 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.56 41.0 3.24e-01 78.5% 48.8%
4123449 4.8.1.35 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.56 41.0 4.07e-01 93.7% 74.1%
4974362 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.55 45.0 3.14e-01 87.3% 35.1%
4986671 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.55 47.0 3.48e-01 96.2% 44.5%
3286836 243.1.1.80 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.55 48.0 4.28e-01 98.7% 91.3%
3344044 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 45.0 4.39e-01 100.0% 83.3%
4078209 7503.1.1.3 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.54 44.0 3.65e-01 89.9% 95.2%
3283746 330.1.1.16 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DUF6968 0.54 45.0 4.50e-01 100.0% 95.0%
3183677 523.1.1.3 a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 0.54 37.0 3.36e-01 75.9% 51.8%
3294153 2484.1.1.5 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1 0.54 40.0 3.00e-01 82.3% 29.5%
3732505 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.53 47.0 4.12e-01 100.0% 83.3%
3219954 11.1.1.673 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_N 0.53 44.0 4.05e-01 92.4% 86.7%
4308194 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.53 43.0 4.29e-01 100.0% 85.9%
4931113 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.52 36.0 3.20e-01 92.4% 50.9%
None 0.52 45.0 3.02e-01 93.7% 27.6%
4193378 2484.1.1.5 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1 0.52 39.0 3.30e-01 83.5% 88.3%
3398694 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.51 42.0 3.95e-01 100.0% 72.4%
3593518 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 45.0 3.51e-01 100.0% 74.3%
3927077 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 45.0 2.99e-01 94.9% 28.4%
3653935 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.50 42.0 2.92e-01 100.0% 37.9%
4978995 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 38.0 2.74e-01 82.3% 96.7%
4028630 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 33.0 3.55e-01 77.2% 81.5%
3225351 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 43.0 2.86e-01 94.9% 27.7%