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JX880072.1__AFV51081.1__MS_002__00002
Bact-VirJX880072.1__AFV51081.1__MS_002__00002
Identity
- Accession:
- JX880072 ↗
- Kingdom:
- phage
Quality
89.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-56
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a79A02 | 3.40.1170.20 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain | 0.71 | 55.0 | 5.08e-01 | 90.6% | 64.8% |
| 5i0hA02 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.68 | 49.0 | 4.56e-01 | 81.1% | 91.7% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.67 | 58.0 | 5.44e-01 | 100.0% | 82.1% |
| 1f0xA01 | 3.30.70.610 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › D-lactate dehydrogenase, cap domain, subdomain 1 | 0.64 | 54.0 | 4.50e-01 | 100.0% | 79.0% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 54.0 | 4.79e-01 | 100.0% | 87.8% |
| 3pm9A03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 53.0 | 4.23e-01 | 100.0% | 76.0% |
| 2x49A02 | 3.40.5.40 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › FHIPEP family, domain 2 | 0.64 | 50.0 | 5.21e-01 | 100.0% | 100.0% |
| 4bpxD00 | 1.20.930.80 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.63 | 45.0 | 3.02e-01 | 79.2% | 19.2% |
| 1r6vA02 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.61 | 49.0 | 4.54e-01 | 100.0% | 84.6% |
| 8hi1E01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 52.0 | 4.52e-01 | 100.0% | 66.7% |
| 4makB00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 50.0 | 4.62e-01 | 100.0% | 76.3% |
| 1oltA02 | 1.10.10.920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.60 | 44.0 | 4.00e-01 | 84.9% | 77.8% |
| 1aroP03 | 3.30.70.370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 45.0 | 3.37e-01 | 84.9% | 47.3% |
| 2bj3D02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.59 | 48.0 | 4.34e-01 | 100.0% | 86.4% |
| 2gmlA02 | 3.30.70.1560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif | 0.59 | 49.0 | 4.54e-01 | 100.0% | 94.6% |
| 4ch7A02 | 3.30.70.3460 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 48.0 | 3.45e-01 | 100.0% | 62.4% |
| 2bi7A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 47.0 | 3.27e-01 | 92.5% | 62.7% |
| 2apoA03 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 49.0 | 4.23e-01 | 100.0% | 90.2% |
| 7pzaA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 40.0 | 3.55e-01 | 75.5% | 64.0% |
| 2kx2A00 | 3.30.780.30 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › | 0.57 | 41.0 | 3.54e-01 | 83.0% | 90.6% |
| 5yk4A04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.57 | 42.0 | 3.24e-01 | 84.9% | 35.3% |
| 1r7jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 40.0 | 3.47e-01 | 75.5% | 60.0% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 2.89e-01 | 73.6% | 36.4% |
| 5i7iA00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.56 | 45.0 | 2.83e-01 | 90.6% | 70.1% |
| 2ccqA00 | 1.20.58.2190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 39.0 | 3.33e-01 | 79.2% | 55.6% |
| 1d5aA01 | 3.30.342.10 | Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 | 0.55 | 43.0 | 3.35e-01 | 100.0% | 76.2% |
| 4p8bA00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.55 | 45.0 | 2.85e-01 | 96.2% | 75.8% |
| 1wimA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 37.0 | 3.15e-01 | 71.7% | 60.6% |
| 6k2eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 4.16e-01 | 100.0% | 86.8% |
| 3oopA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 2.94e-01 | 75.5% | 43.3% |
| 1wudA00 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.53 | 42.0 | 3.84e-01 | 94.3% | 93.5% |
| 3mtjA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 40.0 | 3.83e-01 | 100.0% | 89.5% |
| 4oanB00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.53 | 39.0 | 2.52e-01 | 84.9% | 73.5% |
| 2uvaG09 | 2.40.128.700 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 42.0 | 3.48e-01 | 100.0% | 86.2% |
| 4gywA04 | 3.30.720.150 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.52 | 42.0 | 3.49e-01 | 100.0% | 86.0% |
| 4ljyA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 46.0 | 3.10e-01 | 98.1% | 96.3% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4956946 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 62.0 | 3.79e-01 | 100.0% | 14.6% |
| 3784944 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.70 | 54.0 | 3.35e-01 | 100.0% | 13.9% |
| 5038109 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.70 | 55.0 | 4.07e-01 | 88.7% | 91.7% |
| 3603806 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.70 | 56.0 | 4.93e-01 | 94.3% | 60.0% |
| 4945442 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.67 | 47.0 | 3.54e-01 | 75.5% | 75.7% |
| 5054369 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.67 | 58.0 | 5.25e-01 | 100.0% | 85.3% |
| 5040722 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.67 | 56.0 | 5.43e-01 | 96.2% | 85.0% |
| 5036469 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.66 | 47.0 | 3.65e-01 | 77.4% | 83.2% |
| 5044202 | 304.164.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein NegoA.19184.a C-terminal domain › Hypothetical protein NegoA.19184.a C-terminal domain | 0.66 | 58.0 | 5.31e-01 | 100.0% | 78.6% |
| 4990834 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.65 | 50.0 | 5.11e-01 | 100.0% | 90.0% |
| 5055587 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 45.0 | 3.90e-01 | 75.5% | 84.7% |
| 5060568 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.64 | 53.0 | 5.17e-01 | 100.0% | 96.7% |
| 3961146 | 304.11.1.1 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Acyl_transf_1 | 0.63 | 52.0 | 4.08e-01 | 100.0% | 47.3% |
| 5025566 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.63 | 54.0 | 5.37e-01 | 100.0% | 98.2% |
| 4565839 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.63 | 53.0 | 5.14e-01 | 100.0% | 93.3% |
| 3280833 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.62 | 51.0 | 4.96e-01 | 100.0% | 95.0% |
| 5011032 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.62 | 53.0 | 5.14e-01 | 100.0% | 93.3% |
| 2098117 | 304.56.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › Cas_Cas2CT1978 | 0.61 | 51.0 | 4.36e-01 | 100.0% | 61.1% |
| 4960707 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.61 | 50.0 | 4.82e-01 | 100.0% | 95.4% |
| 4990752 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.61 | 50.0 | 4.61e-01 | 100.0% | 96.0% |
| 5066439 | 304.3.1.14 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › DrrA1-3_C | 0.61 | 49.0 | 4.75e-01 | 100.0% | 93.8% |
| 5072231 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.61 | 51.0 | 4.75e-01 | 100.0% | 98.6% |
| 4647043 | 304.169.1.3 ↗ | a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WCX | 0.61 | 52.0 | 4.70e-01 | 100.0% | 80.0% |
| 4088754 | 2003.1.2.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Thi4 | 0.61 | 49.0 | 3.14e-01 | 92.5% | 65.6% |
| 4940578 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.60 | 44.0 | 3.93e-01 | 81.1% | 73.8% |
| None | — | 0.60 | 48.0 | 3.14e-01 | 92.5% | 65.2% | |
| 4949564 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.60 | 48.0 | 4.75e-01 | 100.0% | 93.3% |
| 4986291 | 101.1.2.643 ↗ | alpha arrays › HTH › HTH › winged helix domain › AAA_assoc_C | 0.60 | 42.0 | 3.87e-01 | 75.5% | 74.3% |
| 4988131 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.59 | 49.0 | 4.42e-01 | 100.0% | 76.2% |
| 4934396 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.59 | 50.0 | 4.74e-01 | 100.0% | 95.4% |
| 4054638 | 304.20.1.4 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C | 0.59 | 49.0 | 3.60e-01 | 100.0% | 79.4% |
| 4993277 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.59 | 46.0 | 3.74e-01 | 90.6% | 44.5% |
| 5010216 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.59 | 48.0 | 4.51e-01 | 100.0% | 81.4% |
| 5070233 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 41.0 | 3.54e-01 | 75.5% | 58.9% |
| 5063454 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.58 | 44.0 | 4.18e-01 | 84.9% | 81.5% |
| 4229570 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.58 | 44.0 | 4.10e-01 | 81.1% | 67.7% |
| 4937677 | 101.1.2.169 ↗ | alpha arrays › HTH › HTH › winged helix domain › PheRS_DBD3 | 0.57 | 42.0 | 3.75e-01 | 79.2% | 58.7% |
| 3956211 | 101.19.1.1 ↗ | alpha arrays › HTH › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › HemN_C | 0.57 | 44.0 | 4.12e-01 | 90.6% | 72.9% |
| 4607785 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.57 | 44.0 | 4.07e-01 | 86.8% | 81.4% |
| 3958385 | 101.1.2.670 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF4194 | 0.57 | 42.0 | 3.52e-01 | 83.0% | 72.0% |
| None | — | 0.56 | 46.0 | 3.04e-01 | 98.1% | 66.0% | |
| 3219532 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.56 | 47.0 | 3.55e-01 | 100.0% | 48.3% |
| 4934123 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.55 | 44.0 | 4.31e-01 | 100.0% | 90.0% |
| 4936264 | 2003.1.2.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Thi4 | 0.55 | 44.0 | 2.92e-01 | 98.1% | 63.1% |
| 3402544 | 137.1.1.12 ↗ | alpha bundles › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › SCHIP-1_C | 0.54 | 37.0 | 3.27e-01 | 75.5% | 47.4% |
| 3496992 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.54 | 46.0 | 3.55e-01 | 100.0% | 52.3% |
| 5013585 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.54 | 46.0 | 3.15e-01 | 100.0% | 37.6% |
| 5027627 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.54 | 39.0 | 3.88e-01 | 79.2% | 92.7% |
| 3579065 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.54 | 41.0 | 2.98e-01 | 90.6% | 46.1% |
| 3493273 | 320.4.1.3 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB | 0.54 | 39.0 | 3.39e-01 | 83.0% | 61.1% |
| 3275570 | 5.1.4.258 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 | 0.54 | 44.0 | 2.75e-01 | 96.2% | 99.2% |
| 3393038 | 5089.1.1.0 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains | 0.53 | 44.0 | 2.80e-01 | 100.0% | 68.8% |
| 3190884 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.51 | 44.0 | 2.57e-01 | 100.0% | 12.4% |
| 3875424 | 5.1.4.428 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, LLGL, Lgl_C | 0.51 | 42.0 | 2.34e-01 | 100.0% | 49.0% |