AGC34568.1

Arc-Vir

KC117378__AGC34568.1__HSTV1-23__00023

Identity

Accession:: KC117378 ↗
Protein ID:: AGC34568.1 ↗
Kingdom:: archaea

Quality

79.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kirjokansivirales› Shortaselviridae› Lonfivirus› Haloarcula_sinaiiensis_tailed_virus_1

TaxID: 1262530

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-69

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ydxA02	1.10.287.1120	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein	0.87	62.0	5.29e-01	74.6%	48.9%
2ehwA00	6.10.140.1220	Special › Helix non-globular › Helix Hairpins ›	0.85	75.0	5.95e-01	96.6%	97.4%
3nyjA00	1.20.120.770	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain	0.83	70.0	4.86e-01	91.5%	30.4%
1t98A02	1.20.58.590	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain	0.81	65.0	4.67e-01	86.4%	92.0%
1zpyA00	6.10.140.1960	Special › Helix non-globular › Helix Hairpins ›	0.80	57.0	4.84e-01	76.3%	48.4%
2b5dX01	3.20.110.10	Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain	0.76	55.0	3.25e-01	76.3%	21.0%
3ce2A01	1.20.140.70	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain	0.69	52.0	3.82e-01	88.1%	31.2%
6ofsA02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.66	44.0	2.96e-01	83.1%	18.3%
1ywfA00	3.90.190.10	Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily	0.58	42.0	2.88e-01	79.7%	73.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4452871	192.7.1.3 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N	0.77	64.0	5.52e-01	89.8%	98.9%
4528712	109.4.1.3083 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29810	0.70	62.0	3.95e-01	96.6%	24.8%
4129121	3843.1.1.4 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB	0.65	47.0	4.02e-01	78.0%	47.0%

D2 high residues 71-193

PDB

Domain cluster: rep: GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00487__D19-147

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7sf7A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.57	42.0	3.34e-01	78.9%	70.5%
4djhA01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.56	42.0	3.22e-01	78.9%	67.6%
1vw4801	1.10.1200.10	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like	0.55	32.0	3.97e-01	78.9%	95.9%
5zjgA02	1.10.246.130	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain	0.54	36.0	3.74e-01	70.7%	74.1%
1cgnA00	1.20.120.10	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562	0.53	40.0	4.07e-01	80.5%	96.8%
3eabE00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.52	31.0	3.70e-01	73.2%	86.0%
2a3qA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.52	40.0	4.22e-01	91.1%	88.5%
4yzgA00	3.60.40.10	Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain	0.52	42.0	3.25e-01	88.6%	88.1%
3o10C00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.52	43.0	4.20e-01	91.9%	100.0%
3wd6A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.51	40.0	4.09e-01	81.3%	88.1%
3iqcA00	1.20.120.340	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS	0.50	43.0	4.42e-01	95.1%	97.5%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4999379	601.7.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain	0.60	49.0	4.57e-01	86.2%	90.0%
3716154	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.59	31.0	3.78e-01	74.0%	78.8%
4554658	632.2.1.16 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › PLDc_N	0.56	38.0	4.38e-01	77.2%	100.0%
3726384	604.4.1.0 ↗	alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP	0.54	35.0	3.98e-01	76.4%	87.8%
3262626	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.54	41.0	3.52e-01	78.0%	77.9%
3416752	3890.1.1.0 ↗	alpha bundles › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins	0.50	43.0	3.57e-01	95.1%	93.8%