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KC139516.1__AGF88086.1__SP016_00155__00031

Bact-Vir

KC139516.1__AGF88086.1__SP016_00155__00031

Identity

Accession:
KC139516 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_FSL_SP-016

TaxID: 1173740

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 289-337
PDB
Domain cluster: rep: OR515479.1__WNL63470.1__X__00194__D454-499
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.91 77.0 7.81e-01 93.9% 91.7%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.88 75.0 7.47e-01 93.9% 88.2%
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.85 71.0 5.61e-01 89.8% 49.5%
1aiwA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.82 69.0 6.37e-01 91.8% 85.5%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.82 74.0 6.42e-01 100.0% 86.3%
1ed7A00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.77 61.0 6.27e-01 87.8% 100.0%
1yueA02 2.10.10.40 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.76 65.0 6.05e-01 95.9% 98.4%
4oj5A02 2.10.10.80 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.70 59.0 5.32e-01 100.0% 88.7%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 47.0 4.96e-01 81.6% 84.1%
4gnrA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 56.0 3.97e-01 100.0% 32.0%
4maaA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 57.0 3.89e-01 100.0% 32.9%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 4.06e-01 73.5% 58.3%
4n0qA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 53.0 3.76e-01 98.0% 31.5%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.56e-01 91.8% 71.2%
4fuvA00 2.40.160.170 Mainly Beta › Beta Barrel › Porin › 0.60 49.0 3.25e-01 93.9% 61.0%
4amcA01 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.58 39.0 4.08e-01 79.6% 76.1%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.57 49.0 3.65e-01 100.0% 43.9%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.46e-01 73.5% 55.3%
4lqeA00 3.40.1350.140 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › MepB-like 0.57 46.0 3.46e-01 100.0% 75.8%
1iq8A04 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.57 44.0 3.96e-01 93.9% 93.6%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.09e-01 83.7% 71.0%
4cckA03 3.90.930.40 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.56 44.0 3.22e-01 89.8% 63.0%
2q07A03 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.55 42.0 3.95e-01 91.8% 95.5%
5tw4A02 2.30.140.20 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain 0.54 38.0 3.50e-01 77.6% 95.7%
1xg9A02 3.10.25.20 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › 0.53 44.0 4.15e-01 100.0% 96.8%
4lgcA00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 40.0 2.47e-01 100.0% 43.3%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 37.0 2.92e-01 100.0% 35.8%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026481 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.95 81.0 8.06e-01 93.9% 88.0%
4307941 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.94 79.0 7.34e-01 89.8% 96.6%
4009008 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.91 75.0 7.16e-01 87.8% 94.5%
3412645 64.3.1.4 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › Tmp39 0.90 64.0 5.62e-01 75.5% 54.3%
2389402 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.89 76.0 7.37e-01 93.9% 83.3%
4026053 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.89 64.0 6.99e-01 77.6% 92.5%
1322862 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.87 73.0 7.43e-01 89.8% 97.9%
1322863 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.87 72.0 7.40e-01 87.8% 100.0%
4110715 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.87 75.0 6.95e-01 91.8% 81.4%
4444075 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.87 71.0 7.53e-01 89.8% 100.0%
4009007 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.86 75.0 7.47e-01 93.9% 96.0%
3971347 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.86 76.0 7.15e-01 95.9% 86.2%
3972100 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.85 75.0 6.71e-01 93.9% 70.8%
1694867 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.84 73.0 7.08e-01 93.9% 96.2%
8553 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.82 69.0 6.37e-01 91.8% 85.5%
1291025 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.82 74.0 6.42e-01 100.0% 86.3%
4149799 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.82 66.0 6.58e-01 87.8% 98.0%
4233290 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.80 69.0 6.92e-01 95.9% 98.0%
2966957 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.77 65.0 5.24e-01 93.9% 64.1%
4009012 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.77 68.0 6.20e-01 98.0% 81.2%
3981632 70.4.1.9 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 0.72 50.0 5.46e-01 83.7% 90.0%
2736861 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.70 56.0 5.14e-01 91.8% 73.1%
2736862 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.69 56.0 5.19e-01 98.0% 80.9%
4168203 1143.1.1.1 ↗ beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.63 49.0 4.30e-01 89.8% 61.3%
3502375 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.63 47.0 4.96e-01 79.6% 91.1%
3435159 304.4.1.55 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › GUB_WAK_bind 0.63 48.0 3.41e-01 100.0% 26.4%
4419948 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 49.0 4.50e-01 89.8% 70.8%
4646632 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 50.0 4.51e-01 89.8% 69.2%
5001934 2004.1.1.554 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrB_inter 0.60 40.0 2.41e-01 100.0% 8.5%
3558025 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 45.0 2.74e-01 87.8% 12.1%
3619978 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 44.0 2.64e-01 85.7% 11.3%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.58 41.0 3.68e-01 75.5% 57.1%
3478979 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.58 50.0 3.73e-01 100.0% 45.4%
4950782 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.57 49.0 3.67e-01 100.0% 68.5%
2429140 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 42.0 2.55e-01 85.7% 12.0%
3164741 506.2.1.1 ↗ beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UB2H 0.54 43.0 3.65e-01 100.0% 53.8%
3449580 7502.1.1.2 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.53 42.0 2.88e-01 91.8% 89.7%
3853638 4.8.1.9 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_2 0.52 36.0 3.06e-01 71.4% 53.8%
3445677 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.50 41.0 2.87e-01 100.0% 34.9%
2978978 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.50 40.0 3.50e-01 91.8% 58.7%
D2 medium residues 214-285
PDB
Domain cluster: rep: MK493321.1__QBQ74980.1__RW110999_102__00095__D288-351