←Back to structures

KC139516.1__AGF88115.1__SP016_00300__00060

Bact-Vir

KC139516.1__AGF88115.1__SP016_00300__00060

Identity

Accession:
KC139516 ↗
Kingdom:
phage

Quality

69.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_FSL_SP-016

TaxID: 1173740

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-100
PDB
Domain cluster: rep: MN103401.1__QEA10877.1__X__00020__D185-234
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8e7cA02 1.10.1840.10 Mainly Alpha › Orthogonal Bundle › main proteinase (3clpro) structure, domain 3 › main proteinase (3clpro) structure, domain 3 0.70 58.0 4.77e-01 98.0% 50.0%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 44.0 3.93e-01 96.1% 46.1%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.65 48.0 3.60e-01 78.4% 64.2%
2wa5A01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.65 44.0 3.54e-01 70.6% 73.5%
3b40A02 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.64 41.0 3.96e-01 74.5% 58.6%
1h2tC03 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 47.0 3.00e-01 78.4% 18.6%
1qo0D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 5.13e-01 96.1% 97.8%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 50.0 4.30e-01 100.0% 82.3%
2fp1B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.62 53.0 3.75e-01 100.0% 42.7%
2pjqA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.61 50.0 4.33e-01 100.0% 92.1%
2h9dD00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.61 42.0 3.46e-01 76.5% 37.0%
2kpoA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 41.0 3.26e-01 72.5% 93.6%
3rmiA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.59 43.0 3.46e-01 78.4% 53.3%
1uaaA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 49.0 4.36e-01 92.2% 78.4%
3tw6A06 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 36.0 3.63e-01 86.3% 57.4%
2o5rA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.58 42.0 4.32e-01 94.1% 85.4%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.57 41.0 4.20e-01 100.0% 87.5%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 48.0 4.47e-01 100.0% 77.6%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.54 46.0 3.49e-01 98.0% 65.1%
2yi9A05 1.20.1270.270 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › VP1, C-terminal extension domain 0.53 44.0 3.96e-01 100.0% 64.9%
3mc1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 42.0 3.94e-01 100.0% 70.1%
4eswA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 42.0 3.42e-01 100.0% 67.6%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5030976 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.74 50.0 4.29e-01 74.5% 45.0%
4886542 2002.1.1.413 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HCS_D2 0.72 55.0 5.43e-01 96.1% 78.2%
4008532 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.71 47.0 4.03e-01 74.5% 42.4%
5077267 3651.1.1.0 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.69 50.0 3.69e-01 78.4% 88.1%
4984693 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.68 52.0 5.32e-01 98.0% 86.0%
3286450 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.68 49.0 3.55e-01 76.5% 76.4%
3279186 7579.1.1.102 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Hydrolase_4 0.67 48.0 2.90e-01 76.5% 18.0%
3057329 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.62 49.0 3.16e-01 86.3% 21.6%
5075474 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.61 45.0 3.93e-01 80.4% 70.0%
4945217 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.60 48.0 3.48e-01 86.3% 95.6%
4941193 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 43.0 3.54e-01 76.5% 74.1%
3954237 532.2.1.16 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › DUF732 0.56 46.0 4.12e-01 98.0% 100.0%
5072615 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.54 44.0 3.59e-01 100.0% 80.9%