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KC139560.1__AGF89005.1__SP029_00115__00023
Bact-VirKC139560.1__AGF89005.1__SP029_00115__00023
Identity
- Accession:
- KC139560 ↗
- Kingdom:
- phage
Quality
80.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Kuttervirus›
Salmonella_phage_FSL_SP-029
TaxID: 1173767
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-69_175-183
Domain cluster:
representative
CATH (64)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.72 | 50.0 | 4.87e-01 | 88.0% | 65.1% |
| 4z9eA00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.64 | 50.0 | 4.87e-01 | 86.7% | 98.8% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.63 | 50.0 | 4.76e-01 | 86.7% | 95.6% |
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.63 | 55.0 | 5.04e-01 | 100.0% | 87.3% |
| 3e23A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 50.0 | 3.68e-01 | 88.0% | 33.8% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 52.0 | 4.94e-01 | 100.0% | 77.5% |
| 5xoyB02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 54.0 | 4.84e-01 | 100.0% | 89.7% |
| 1nbwA02 | 3.90.470.30 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Coenzyme B12-Dependent Enzyme linker domain | 0.62 | 50.0 | 4.03e-01 | 88.0% | 93.0% |
| 4necC01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 48.0 | 3.51e-01 | 88.0% | 37.0% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.61 | 44.0 | 4.39e-01 | 88.0% | 74.4% |
| 3pfoA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 54.0 | 4.54e-01 | 100.0% | 92.2% |
| 5mmjj00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.61 | 52.0 | 4.85e-01 | 100.0% | 90.9% |
| 4iyqA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 51.0 | 4.58e-01 | 100.0% | 68.2% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 52.0 | 4.68e-01 | 100.0% | 88.0% |
| 5k8mA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 51.0 | 4.34e-01 | 100.0% | 89.3% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 51.0 | 4.68e-01 | 100.0% | 73.7% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 52.0 | 4.51e-01 | 100.0% | 82.6% |
| 8c46A01 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 52.0 | 4.52e-01 | 100.0% | 87.7% |
| 3fz2A00 | 3.30.70.1700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U | 0.58 | 47.0 | 3.93e-01 | 88.0% | 55.5% |
| 6gdxA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 49.0 | 4.39e-01 | 100.0% | 67.3% |
| 4ewtA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 50.0 | 4.41e-01 | 100.0% | 87.0% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 50.0 | 4.60e-01 | 100.0% | 75.2% |
| 3b8pA00 | 3.30.1890.10 | Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like | 0.57 | 51.0 | 3.70e-01 | 100.0% | 89.9% |
| 2bzgA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 45.0 | 3.23e-01 | 86.7% | 28.8% |
| 4rx6D00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 49.0 | 4.46e-01 | 100.0% | 73.8% |
| 1rtzA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.57 | 49.0 | 4.00e-01 | 100.0% | 56.6% |
| 6qdwt00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 43.0 | 4.08e-01 | 88.0% | 66.7% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 49.0 | 4.43e-01 | 100.0% | 72.6% |
| 1p1lA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 48.0 | 4.39e-01 | 100.0% | 70.6% |
| 4e98C00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 48.0 | 4.41e-01 | 100.0% | 73.3% |
| 1k8kD01 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.56 | 50.0 | 3.98e-01 | 98.7% | 61.6% |
| 2bj0A00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.56 | 45.0 | 3.27e-01 | 86.7% | 35.0% |
| 5aj3F00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.56 | 49.0 | 4.20e-01 | 100.0% | 67.5% |
| 5c4iE01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.56 | 48.0 | 3.55e-01 | 98.7% | 72.9% |
| 6h05A00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.56 | 47.0 | 3.43e-01 | 100.0% | 81.8% |
| 2nuhA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 48.0 | 4.35e-01 | 100.0% | 74.0% |
| 5v7qT00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 42.0 | 3.95e-01 | 88.0% | 65.3% |
| 2rb7A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 49.0 | 4.36e-01 | 100.0% | 86.9% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.55 | 48.0 | 3.53e-01 | 100.0% | 67.9% |
| 4y6iA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 47.0 | 4.34e-01 | 100.0% | 74.8% |
| 2v8hA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 48.0 | 4.20e-01 | 100.0% | 87.9% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.55 | 48.0 | 4.50e-01 | 100.0% | 88.3% |
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.55 | 44.0 | 3.06e-01 | 88.0% | 39.6% |
| 3bczA00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.54 | 43.0 | 2.91e-01 | 88.0% | 88.4% |
| 4pxeA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 46.0 | 4.10e-01 | 100.0% | 82.9% |
| 5b08A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 47.0 | 4.34e-01 | 100.0% | 84.0% |
| 3x1lB03 | 2.60.40.4350 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 47.0 | 4.23e-01 | 100.0% | 75.2% |
| 1z2zA01 | 3.30.2350.20 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, catalytic domain | 0.54 | 46.0 | 3.29e-01 | 98.7% | 86.6% |
| 5uejA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 46.0 | 4.10e-01 | 100.0% | 86.8% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.53 | 45.0 | 4.15e-01 | 98.7% | 74.8% |
| 3a27A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 38.0 | 2.79e-01 | 88.0% | 26.0% |
| 4fvmA02 | 3.30.70.2820 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 46.0 | 4.18e-01 | 100.0% | 80.6% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.53 | 42.0 | 3.61e-01 | 88.0% | 56.5% |
| 2bg9C01 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.53 | 42.0 | 3.07e-01 | 88.0% | 32.5% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.52 | 43.0 | 3.88e-01 | 93.3% | 70.8% |
| 4uxuA00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.52 | 42.0 | 3.16e-01 | 93.3% | 70.5% |
| 6ofsA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 44.0 | 3.43e-01 | 100.0% | 84.8% |
| 4k00A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 41.0 | 3.45e-01 | 89.3% | 99.3% |
| 4fprB00 | 3.30.70.2910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 43.0 | 3.77e-01 | 100.0% | 74.2% |
| 6urtA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 44.0 | 4.26e-01 | 100.0% | 92.0% |
| 3gb0A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 44.0 | 3.90e-01 | 100.0% | 83.9% |
| 3rkxA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 43.0 | 3.25e-01 | 100.0% | 61.0% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.50 | 37.0 | 3.88e-01 | 88.0% | 92.2% |
| 2p8jA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 39.0 | 2.92e-01 | 86.7% | 51.0% |
ECOD (90)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4618987 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 53.0 | 4.45e-01 | 88.0% | 44.8% |
| 5061342 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.73 | 56.0 | 5.08e-01 | 86.7% | 60.0% |
| 3735094 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.72 | 57.0 | 4.18e-01 | 86.7% | 33.2% |
| 4928530 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.72 | 52.0 | 5.11e-01 | 85.3% | 71.2% |
| 4945893 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.70 | 53.0 | 5.01e-01 | 85.3% | 67.8% |
| 5047813 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.69 | 53.0 | 4.15e-01 | 88.0% | 38.7% |
| 3623538 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.67 | 53.0 | 4.03e-01 | 88.0% | 36.1% |
| 4954550 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.66 | 53.0 | 4.62e-01 | 88.0% | 67.8% |
| 4025055 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.66 | 48.0 | 4.47e-01 | 88.0% | 61.1% |
| 4481559 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.65 | 58.0 | 4.81e-01 | 100.0% | 83.8% |
| 3198674 | 246.1.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase | 0.64 | 49.0 | 3.57e-01 | 84.0% | 83.3% |
| 3589403 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.64 | 46.0 | 3.93e-01 | 85.3% | 47.5% |
| 3365211 | 304.39.1.2 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Msl2-3_C | 0.62 | 48.0 | 4.84e-01 | 88.0% | 84.0% |
| 4026343 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.62 | 50.0 | 4.64e-01 | 88.0% | 96.8% |
| 141279 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.61 | 54.0 | 4.50e-01 | 100.0% | 90.1% |
| 3430260 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.60 | 51.0 | 3.33e-01 | 94.7% | 45.1% |
| 3795203 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.60 | 52.0 | 3.51e-01 | 96.0% | 49.5% |
| 4963468 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.60 | 42.0 | 3.86e-01 | 88.0% | 55.0% |
| 4057397 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.60 | 47.0 | 4.12e-01 | 88.0% | 56.5% |
| 3965794 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.60 | 55.0 | 5.03e-01 | 100.0% | 91.6% |
| 3353115 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.60 | 47.0 | 3.29e-01 | 88.0% | 26.2% |
| 3601192 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.60 | 51.0 | 3.20e-01 | 94.7% | 41.5% |
| 4927441 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.59 | 51.0 | 4.87e-01 | 98.7% | 93.3% |
| 4975701 | 304.102.1.2 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD | 0.59 | 52.0 | 3.69e-01 | 98.7% | 34.3% |
| 4016159 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.59 | 50.0 | 3.24e-01 | 97.3% | 51.5% |
| 4937751 | 304.8.1.82 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 | 0.59 | 51.0 | 4.41e-01 | 97.3% | 65.0% |
| 4201083 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.59 | 52.0 | 4.75e-01 | 100.0% | 79.0% |
| 3484070 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.59 | 51.0 | 4.72e-01 | 100.0% | 93.0% |
| 4322566 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.59 | 50.0 | 4.71e-01 | 98.7% | 94.7% |
| None | — | 0.58 | 46.0 | 3.18e-01 | 86.7% | 32.1% | |
| 3974775 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.58 | 50.0 | 4.69e-01 | 100.0% | 76.8% |
| 4927440 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.58 | 51.0 | 4.68e-01 | 100.0% | 92.0% |
| 3661686 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.58 | 51.0 | 4.58e-01 | 100.0% | 91.4% |
| 4088643 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.58 | 49.0 | 4.51e-01 | 100.0% | 87.6% |
| 4004140 | 389.4.1.7 ↗ | few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 | 0.58 | 45.0 | 4.61e-01 | 86.7% | 90.0% |
| 4025112 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.58 | 50.0 | 4.61e-01 | 100.0% | 92.0% |
| 3718004 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.58 | 45.0 | 3.12e-01 | 86.7% | 30.9% |
| 3309856 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.58 | 51.0 | 4.58e-01 | 100.0% | 77.1% |
| 3516671 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.57 | 50.0 | 4.39e-01 | 100.0% | 90.4% |
| 3971017 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.57 | 49.0 | 4.39e-01 | 98.7% | 77.3% |
| 3943250 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.57 | 49.0 | 4.34e-01 | 100.0% | 88.7% |
| 5024188 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.57 | 50.0 | 4.39e-01 | 100.0% | 80.0% |
| 409322 | 304.5.1.3 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 | 0.57 | 49.0 | 4.43e-01 | 100.0% | 72.0% |
| 4534747 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.57 | 49.0 | 4.35e-01 | 100.0% | 82.6% |
| 4945451 | 304.25.1.11 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › Peptidase_M20 | 0.57 | 50.0 | 4.38e-01 | 100.0% | 81.7% |
| 4626960 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.57 | 49.0 | 4.32e-01 | 100.0% | 87.8% |
| 4941725 | 304.5.1.3 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 | 0.57 | 49.0 | 4.51e-01 | 100.0% | 76.0% |
| 3386604 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.57 | 49.0 | 4.31e-01 | 100.0% | 82.6% |
| 3972333 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.56 | 49.0 | 4.31e-01 | 100.0% | 82.6% |
| 4933378 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.56 | 47.0 | 4.36e-01 | 100.0% | 85.7% |
| 4034375 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.56 | 48.0 | 4.25e-01 | 100.0% | 87.0% |
| 3579169 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.56 | 48.0 | 4.47e-01 | 100.0% | 92.0% |
| 3800859 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 48.0 | 3.65e-01 | 100.0% | 46.0% |
| 4964282 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.56 | 48.0 | 4.15e-01 | 100.0% | 83.2% |
| 4350044 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.56 | 49.0 | 4.48e-01 | 100.0% | 82.0% |
| 3796165 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 51.0 | 2.96e-01 | 100.0% | 24.2% |
| 4940026 | 4081.1.1.17 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF7345 | 0.55 | 47.0 | 3.70e-01 | 100.0% | 64.6% |
| 5027749 | 304.5.1.3 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 | 0.55 | 47.0 | 4.38e-01 | 100.0% | 77.0% |
| 3610546 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.55 | 42.0 | 3.87e-01 | 85.3% | 79.0% |
| 224015 | 1.1.9.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › RE_AspBHI_N | 0.55 | 43.0 | 3.05e-01 | 88.0% | 37.8% |
| 4322730 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.55 | 48.0 | 4.26e-01 | 100.0% | 76.1% |
| 3970088 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 47.0 | 4.40e-01 | 100.0% | 80.0% |
| 3469819 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.55 | 48.0 | 4.14e-01 | 100.0% | 69.2% |
| 3265287 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 44.0 | 2.86e-01 | 92.0% | 44.0% |
| 3938890 | 206.1.2.2 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › PIP5K | 0.54 | 45.0 | 3.05e-01 | 93.3% | 56.7% |
| 3657610 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 45.0 | 2.90e-01 | 93.3% | 39.8% |
| 3552777 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 45.0 | 2.66e-01 | 93.3% | 24.2% |
| 4012647 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.54 | 45.0 | 2.94e-01 | 94.7% | 47.1% |
| 3592833 | 206.1.1.72 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal | 0.54 | 46.0 | 2.97e-01 | 93.3% | 42.8% |
| 3939027 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 45.0 | 2.88e-01 | 96.0% | 35.1% |
| 4025013 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.54 | 41.0 | 2.91e-01 | 86.7% | 31.3% |
| 3710350 | 206.1.1.72 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal | 0.54 | 46.0 | 2.98e-01 | 94.7% | 43.6% |
| 3274733 | 2003.1.5.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 | 0.54 | 41.0 | 2.74e-01 | 86.7% | 25.2% |
| 3194447 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 44.0 | 2.89e-01 | 94.7% | 42.7% |
| 5078578 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.53 | 46.0 | 3.79e-01 | 100.0% | 79.2% |
| 4340137 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 44.0 | 2.89e-01 | 92.0% | 48.3% |
| 4406666 | 76.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M | 0.53 | 41.0 | 3.21e-01 | 86.7% | 97.1% |
| 3605908 | 304.31.1.3 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › FAZ1_cons | 0.53 | 47.0 | 4.03e-01 | 100.0% | 92.5% |
| 3723425 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 46.0 | 3.04e-01 | 100.0% | 43.4% |
| 4342306 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.52 | 46.0 | 4.23e-01 | 100.0% | 79.0% |
| 4019452 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.52 | 45.0 | 2.96e-01 | 98.7% | 46.2% |
| 3694611 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 42.0 | 2.76e-01 | 92.0% | 56.1% |
| 3469420 | 206.1.2.2 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › PIP5K | 0.52 | 43.0 | 2.83e-01 | 93.3% | 55.9% |
| 3820425 | 3758.1.1.105 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Msl2-3_C | 0.52 | 45.0 | 4.07e-01 | 100.0% | 83.8% |
| 4944896 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.51 | 43.0 | 3.76e-01 | 100.0% | 86.7% |
| 3540649 | 11.1.1.789 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › KIAA1549 | 0.51 | 42.0 | 3.78e-01 | 100.0% | 86.7% |
| 3539435 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 39.0 | 2.58e-01 | 81.3% | 27.7% |
| 3177336 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 43.0 | 3.96e-01 | 100.0% | 71.4% |
| 5071539 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.51 | 37.0 | 3.86e-01 | 86.7% | 85.7% |
| 164141 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.50 | 39.0 | 2.92e-01 | 86.7% | 51.0% |
D2
high
residues 74-156
Domain cluster:
rep: IMGVR_UViG_3300007985_000017-3300007985-Ga0100381_100027532__D72-139
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kbmB01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.68 | 41.0 | 4.87e-01 | 96.4% | 90.9% |
| 3zuaA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.68 | 39.0 | 3.31e-01 | 100.0% | 35.9% |
| 1qypA00 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.65 | 36.0 | 4.26e-01 | 86.7% | 80.7% |
| 4fw1A02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.64 | 37.0 | 4.52e-01 | 100.0% | 88.9% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 43.0 | 4.52e-01 | 100.0% | 82.4% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.61 | 42.0 | 4.42e-01 | 98.8% | 80.0% |
| 2x5rA01 | 3.30.470.40 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.58 | 48.0 | 4.40e-01 | 94.0% | 77.4% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.55 | 28.0 | 3.04e-01 | 88.0% | 55.1% |
| 4hdoA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 31.0 | 3.05e-01 | 97.6% | 48.9% |
| 2evrA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 38.0 | 4.04e-01 | 97.6% | 86.5% |
| 3f8dA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 35.0 | 3.16e-01 | 72.3% | 92.7% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3212945 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.72 | 43.0 | 5.05e-01 | 97.6% | 84.7% |
| 3587295 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.69 | 51.0 | 5.73e-01 | 97.6% | 100.0% |
| 4172303 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.66 | 30.0 | 2.60e-01 | 86.7% | 28.0% |
| 3436078 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.65 | 56.0 | 4.90e-01 | 94.0% | 100.0% |
| 3430287 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.62 | 45.0 | 3.09e-01 | 75.9% | 98.0% |
| 3937157 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.61 | 38.0 | 4.13e-01 | 96.4% | 74.3% |
| 4934376 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 42.0 | 4.45e-01 | 100.0% | 92.9% |
| 3492069 | 4292.2.1.2 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B | 0.53 | 40.0 | 3.72e-01 | 100.0% | 63.8% |
| 4945301 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 47.0 | 3.89e-01 | 100.0% | 94.0% |
| 3424086 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.53 | 36.0 | 2.89e-01 | 71.1% | 48.0% |
| 4014986 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 39.0 | 2.63e-01 | 83.1% | 59.8% |
| 538 | 4.1.1.120 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_16 | 0.52 | 38.0 | 4.03e-01 | 97.6% | 86.5% |
| 3276239 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 39.0 | 3.35e-01 | 85.5% | 66.7% |
| 3634384 | 4292.2.1.2 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B | 0.50 | 44.0 | 3.78e-01 | 98.8% | 61.5% |
D3
high
residues 193-257
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2c9kA01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.75 | 40.0 | 2.68e-01 | 87.7% | 14.6% |
| 1szhA01 | 1.10.150.360 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.67 | 53.0 | 5.33e-01 | 86.2% | 87.7% |
| 2q14B01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.66 | 54.0 | 3.70e-01 | 90.8% | 66.5% |
| 3kw0A00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.62 | 47.0 | 3.39e-01 | 81.5% | 77.2% |
| 4pdyA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.62 | 49.0 | 3.41e-01 | 89.2% | 68.2% |
| 4pklA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.60 | 51.0 | 4.34e-01 | 95.4% | 91.8% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.60 | 44.0 | 4.10e-01 | 76.9% | 72.8% |
| 1xg7A02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.59 | 51.0 | 4.07e-01 | 100.0% | 58.0% |
| 3ce9A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.59 | 47.0 | 3.52e-01 | 93.8% | 43.3% |
| 4uobA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.59 | 50.0 | 4.15e-01 | 100.0% | 69.0% |
| 3n3dB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.59 | 51.0 | 3.31e-01 | 100.0% | 85.0% |
| 7dkaA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 50.0 | 3.63e-01 | 100.0% | 38.5% |
| 5b57B00 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.57 | 49.0 | 3.19e-01 | 100.0% | 91.8% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 39.0 | 3.70e-01 | 98.5% | 62.0% |
| 2zgyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 46.0 | 3.76e-01 | 100.0% | 72.1% |
| 1nf1A02 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.55 | 47.0 | 3.52e-01 | 100.0% | 41.2% |
| 4a5dB00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.54 | 38.0 | 2.72e-01 | 76.9% | 68.1% |
| 4uyeA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.54 | 46.0 | 3.94e-01 | 98.5% | 94.5% |
| 2ffjA01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.54 | 39.0 | 4.15e-01 | 78.5% | 98.2% |
| 3w0lD02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.53 | 41.0 | 2.67e-01 | 86.2% | 93.9% |
| 2d4uB00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.53 | 38.0 | 2.98e-01 | 100.0% | 32.9% |
| 1oaoC01 | 1.10.8.190 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Carbon monoxide dehydrogenase alpha subunit. Chain M, domain 1 | 0.53 | 39.0 | 3.27e-01 | 81.5% | 60.0% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.52 | 36.0 | 3.56e-01 | 100.0% | 66.2% |
| 3tmmA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.52 | 40.0 | 3.43e-01 | 95.4% | 50.5% |
| 4p9tA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 35.0 | 3.02e-01 | 100.0% | 40.0% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.51 | 39.0 | 3.66e-01 | 83.1% | 82.7% |
| 1h2uA01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 35.0 | 2.41e-01 | 73.8% | 22.1% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3594656 | 195.1.1.0 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like | 0.70 | 55.0 | 4.69e-01 | 87.7% | 60.9% |
| 3708811 | 195.1.1.3 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NSUN5_N | 0.68 | 57.0 | 4.63e-01 | 93.8% | 56.0% |
| 4027475 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.68 | 56.0 | 5.21e-01 | 93.8% | 96.5% |
| 4955486 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.66 | 50.0 | 4.25e-01 | 81.5% | 51.8% |
| 3484314 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.61 | 51.0 | 4.08e-01 | 96.9% | 77.1% |
| 3229563 | 181.1.1.11 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › DUF4473 | 0.61 | 46.0 | 4.26e-01 | 81.5% | 96.5% |
| 4112615 | 4067.1.1.1 ↗ | alpha bundles › FdhE-like › FdhE-like › FdhE-like › FdhE | 0.61 | 48.0 | 3.77e-01 | 92.3% | 53.1% |
| 5070580 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.58 | 42.0 | 4.42e-01 | 76.9% | 91.5% |
| 3919392 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.58 | 45.0 | 3.78e-01 | 92.3% | 48.3% |
| 3790611 | 142.1.1.22 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SCAF11-like_C | 0.56 | 40.0 | 3.94e-01 | 73.8% | 80.0% |
| 1097268 | 633.19.1.1 ↗ | alpha bundles › Bromodomain-like › Hypothetical protein lpg2422 helical bundle domain › Hypothetical protein lpg2422 helical bundle domain › DUF6842 | 0.55 | 39.0 | 3.63e-01 | 98.5% | 58.3% |
| 3491229 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.53 | 35.0 | 3.31e-01 | 70.8% | 60.0% |
| 2582657 | 601.2.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › 7tm_1 | 0.52 | 41.0 | 3.45e-01 | 100.0% | 48.3% |
| 3288147 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.52 | 36.0 | 3.17e-01 | 72.3% | 68.0% |
| 3251599 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 3.71e-01 | 78.5% | 82.7% |
| 5022014 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.52 | 34.0 | 2.98e-01 | 100.0% | 41.9% |
| 3693124 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.52 | 40.0 | 3.63e-01 | 100.0% | 61.1% |
| 4185708 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.52 | 37.0 | 3.35e-01 | 78.5% | 64.2% |
| 4928014 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.52 | 40.0 | 2.74e-01 | 87.7% | 45.0% |
| 60261 | 166.1.1.0 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C | 0.51 | 37.0 | 3.35e-01 | 78.5% | 64.2% |
| 4080592 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.51 | 37.0 | 3.40e-01 | 80.0% | 66.7% |
| 4957472 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.51 | 38.0 | 2.46e-01 | 83.1% | 31.7% |