←Back to structures

KC139674.1__AGF89699.1__SP099_00275__00002

Bact-Vir

KC139674.1__AGF89699.1__SP099_00275__00002

Identity

Accession:
KC139674 ↗
Kingdom:
phage

Quality

86.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Chivirus› Salmonella_phage_FSL_SP-099

TaxID: 1173756

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-139
PDB
Domain cluster: rep: MZ818790.2__WAY16719.1__OPA17_45__00045__D356-373_399-556
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dyiA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.71 41.0 5.15e-01 85.6% 95.2%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.68 42.0 5.13e-01 83.5% 96.6%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.66 44.0 5.22e-01 87.8% 100.0%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.64 42.0 4.98e-01 87.8% 100.0%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 32.0 4.07e-01 77.0% 83.7%
3l5iA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 34.0 4.07e-01 80.6% 86.4%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 32.0 4.00e-01 80.6% 90.0%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.59 39.0 3.93e-01 92.1% 66.7%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 35.0 4.06e-01 81.3% 83.5%
4o1nD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 37.0 4.10e-01 84.2% 80.0%
1xeeA01 3.10.20.390 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Chemotaxis-inhibiting protein CHIPS 0.57 33.0 4.03e-01 78.4% 93.9%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 37.0 4.37e-01 83.5% 95.9%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 29.0 3.98e-01 79.9% 100.0%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 38.0 4.36e-01 85.6% 96.2%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 37.0 4.00e-01 84.2% 81.2%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 38.0 4.40e-01 84.2% 100.0%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 41.0 4.20e-01 94.2% 83.2%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 46.0 3.24e-01 91.4% 80.6%
2kd7A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 33.0 3.17e-01 87.8% 51.6%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 31.0 3.72e-01 84.2% 89.5%
1x4yA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 33.0 3.72e-01 82.7% 83.2%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.53 37.0 4.08e-01 90.6% 91.0%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.52 32.0 3.62e-01 88.5% 80.8%
1fyhB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 33.0 3.73e-01 83.5% 85.4%
3liuA01 2.60.40.3160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 30.0 3.20e-01 74.1% 66.9%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 41.0 4.15e-01 87.8% 88.3%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4423739 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.71 45.0 5.40e-01 85.6% 94.7%
4946634 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 43.0 5.14e-01 84.2% 92.2%
4381495 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.70 44.0 5.35e-01 84.2% 96.7%
4042679 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.70 43.0 5.38e-01 81.3% 100.0%
4229140 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.70 45.0 5.46e-01 83.5% 98.9%
4055193 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.70 44.0 5.23e-01 84.2% 92.6%
4592324 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.70 43.0 5.30e-01 83.5% 96.7%
4452870 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.69 43.0 5.30e-01 83.5% 96.7%
4063137 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.69 44.0 5.33e-01 83.5% 97.8%
4188663 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.69 44.0 5.24e-01 84.9% 93.7%
4138546 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.69 43.0 5.24e-01 84.9% 96.7%
4581837 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.69 43.0 5.23e-01 83.5% 96.7%
3966626 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 43.0 5.24e-01 84.2% 96.7%
4682440 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 44.0 5.26e-01 86.3% 95.8%
4060133 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 44.0 5.35e-01 84.9% 100.0%
4087903 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 43.0 5.24e-01 83.5% 97.8%
4203993 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 44.0 5.25e-01 85.6% 95.8%
4262187 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 44.0 5.19e-01 84.9% 94.7%
4214180 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 44.0 5.17e-01 86.3% 94.7%
4074297 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.68 41.0 4.43e-01 83.5% 71.3%
4353877 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 43.0 5.08e-01 84.2% 93.7%
4267752 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 43.0 5.14e-01 84.9% 94.7%
4493188 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 43.0 5.08e-01 85.6% 93.7%
4399542 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 42.0 5.12e-01 84.9% 97.8%
4401809 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 43.0 5.21e-01 85.6% 100.0%
4425722 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 41.0 4.98e-01 83.5% 95.6%
4619658 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 43.0 5.00e-01 86.3% 93.7%
4395520 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 42.0 5.03e-01 86.3% 93.7%
4071868 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 41.0 4.98e-01 84.2% 96.7%
4205951 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 42.0 4.98e-01 84.2% 93.7%
4381868 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 42.0 4.98e-01 85.6% 97.8%
4208972 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 41.0 4.76e-01 84.2% 88.0%
4930890 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 36.0 4.68e-01 79.9% 100.0%
4662737 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 40.0 4.86e-01 84.2% 96.7%
4172288 1.1.7.8 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.63 40.0 4.86e-01 86.3% 100.0%
4220217 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.62 40.0 4.77e-01 89.9% 95.8%
5041917 1.1.7.8 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.62 40.0 4.78e-01 87.1% 100.0%
3243970 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 42.0 4.91e-01 80.6% 98.0%
4431701 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 39.0 4.60e-01 84.9% 94.7%
3868227 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 38.0 4.40e-01 81.3% 90.5%
3753826 11.1.1.396 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Anth_Ig 0.60 35.0 4.28e-01 79.1% 90.0%
4521518 1.1.7.121 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Phage_BR0599 0.60 41.0 4.46e-01 96.4% 85.2%
4971330 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.56 40.0 4.40e-01 87.1% 91.8%
3569194 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 33.0 3.71e-01 82.7% 75.2%
4207197 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 39.0 4.48e-01 86.3% 100.0%
4061526 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 39.0 4.46e-01 84.9% 100.0%
3997045 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 37.0 4.31e-01 83.5% 100.0%
3945286 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 40.0 4.51e-01 87.8% 100.0%
3277790 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 40.0 4.51e-01 87.8% 100.0%
4944696 1.1.7.138 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NAD_binding_1 0.55 38.0 4.35e-01 87.1% 99.0%
3786396 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.54 34.0 3.58e-01 81.3% 66.9%
3693412 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 44.0 4.73e-01 87.8% 100.0%
4373113 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 37.0 4.19e-01 86.3% 95.2%
4361509 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.53 37.0 4.26e-01 85.6% 100.0%
4980898 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 37.0 4.22e-01 84.9% 100.0%
127 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.52 37.0 4.09e-01 86.3% 92.7%
3256005 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 31.0 3.40e-01 80.6% 72.2%