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KC172839.1__AGI61714.1__CKC_33__00033
Bact-VirKC172839.1__AGI61714.1__CKC_33__00033
Identity
- Accession:
- KC172839 ↗
- Kingdom:
- phage
Quality
75.8
mean pLDDT
Taxonomy
TaxID: 1262532
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 6-59
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26003.1 best | Integrase_N_phage | 48.7 | 8.20e-13 | 72.2% | 72.0% |
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6tmfI00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.68 | 57.0 | 3.83e-01 | 94.4% | 54.2% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.65 | 38.0 | 3.95e-01 | 81.5% | 61.2% |
| 3laxA00 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.65 | 45.0 | 3.58e-01 | 72.2% | 47.2% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.64 | 46.0 | 3.30e-01 | 77.8% | 25.1% |
| 2wxfA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 44.0 | 3.45e-01 | 74.1% | 34.5% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 42.0 | 3.71e-01 | 70.4% | 86.4% |
| 1alo006 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.61 | 47.0 | 3.64e-01 | 85.2% | 87.3% |
| 3t5tB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.61 | 42.0 | 2.66e-01 | 72.2% | 37.3% |
| 2ebnA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 41.0 | 2.58e-01 | 70.4% | 15.8% |
| 2xzmG00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.60 | 49.0 | 3.44e-01 | 94.4% | 52.6% |
| 2konA00 | 3.30.160.350 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 45.0 | 4.06e-01 | 87.0% | 63.4% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 40.0 | 3.49e-01 | 74.1% | 43.5% |
| 3s95A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 43.0 | 3.71e-01 | 79.6% | 97.7% |
| 2hw2A00 | 3.20.170.40 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Rifampin ADP-ribosyltransferase domain | 0.57 | 45.0 | 3.36e-01 | 85.2% | 89.1% |
| 5r0dB01 | 2.60.34.20 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › | 0.57 | 39.0 | 2.90e-01 | 72.2% | 72.7% |
| 2xuvB00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.56 | 43.0 | 4.00e-01 | 87.0% | 84.5% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.56 | 42.0 | 3.63e-01 | 87.0% | 92.6% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.55 | 37.0 | 3.44e-01 | 72.2% | 53.2% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.54 | 37.0 | 3.24e-01 | 74.1% | 42.6% |
| 4l3rA00 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 39.0 | 2.96e-01 | 81.5% | 72.0% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 40.0 | 3.70e-01 | 90.7% | 84.2% |
| 3p2aA01 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.52 | 33.0 | 3.85e-01 | 70.4% | 100.0% |
| 7uqyB01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.52 | 44.0 | 3.02e-01 | 100.0% | 89.3% |
| 2onlC01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 40.0 | 3.45e-01 | 85.2% | 95.3% |
| 4zgfA00 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 36.0 | 2.74e-01 | 75.9% | 73.0% |
| 6bm0A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 41.0 | 2.55e-01 | 96.3% | 36.2% |
| 2k89A00 | 3.10.20.870 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain | 0.51 | 35.0 | 3.16e-01 | 74.1% | 55.0% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3396525 | 327.11.2.20 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › BICC1_KH | 0.68 | 45.0 | 4.12e-01 | 70.4% | 97.3% |
| 3789560 | 375.1.1.14 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L32p | 0.67 | 38.0 | 3.25e-01 | 75.9% | 38.7% |
| 3933447 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.66 | 44.0 | 3.61e-01 | 70.4% | 36.2% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.65 | 44.0 | 4.38e-01 | 70.4% | 78.2% |
| 3998700 | 3998.1.1.1 ↗ | alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 | 0.65 | 50.0 | 4.36e-01 | 83.3% | 85.0% |
| 3939425 | 2492.1.1.8 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 | 0.64 | 51.0 | 3.55e-01 | 90.7% | 84.6% |
| 3918540 | 386.1.1.281 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF27082 | 0.64 | 41.0 | 4.42e-01 | 75.9% | 87.5% |
| 3583377 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.64 | 45.0 | 4.25e-01 | 75.9% | 61.5% |
| 3679515 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.64 | 43.0 | 4.56e-01 | 72.2% | 93.3% |
| 2979134 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.64 | 46.0 | 3.56e-01 | 75.9% | 67.9% |
| 3056876 | 167.1.1.0 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 | 0.64 | 46.0 | 3.56e-01 | 75.9% | 67.9% |
| 3680994 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.64 | 44.0 | 2.70e-01 | 74.1% | 21.5% |
| 4075176 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.63 | 56.0 | 4.00e-01 | 100.0% | 36.9% |
| 4153047 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.63 | 55.0 | 4.03e-01 | 100.0% | 39.3% |
| 5018603 | 2006.1.6.15 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 | 0.62 | 43.0 | 2.85e-01 | 72.2% | 51.8% |
| 3740226 | 5051.1.1.7 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp | 0.62 | 47.0 | 2.79e-01 | 83.3% | 81.1% |
| 3743176 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.62 | 51.0 | 3.84e-01 | 94.4% | 76.6% |
| 4928864 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.62 | 46.0 | 2.99e-01 | 79.6% | 43.8% |
| 3272262 | 223.2.1.19 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 | 0.61 | 50.0 | 3.52e-01 | 90.7% | 90.6% |
| 4912929 | 327.11.2.13 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd | 0.60 | 40.0 | 3.24e-01 | 70.4% | 50.5% |
| 4937420 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.59 | 46.0 | 2.69e-01 | 87.0% | 56.2% |
| 4027675 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.59 | 44.0 | 3.23e-01 | 79.6% | 32.9% |
| 3255162 | 3662.1.1.1 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 | 0.58 | 45.0 | 3.59e-01 | 87.0% | 43.5% |
| 5010744 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 44.0 | 4.19e-01 | 92.6% | 72.3% |
| 3623139 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.57 | 42.0 | 2.78e-01 | 81.5% | 29.2% |
| 4929843 | 4123.1.1.0 ↗ | few secondary structure elements › E7 C-terminal domain-like › E7 C-terminal domain-like › E7 C-terminal domain-like | 0.56 | 40.0 | 4.09e-01 | 79.6% | 86.0% |
| 3889364 | 221.1.1.164 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF29299 | 0.56 | 37.0 | 3.41e-01 | 72.2% | 48.8% |
| 3498497 | 301.7.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like | 0.54 | 47.0 | 3.16e-01 | 98.1% | 73.8% |
| 5049518 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 45.0 | 3.47e-01 | 96.3% | 52.7% |
| 3361836 | 2003.1.2.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GDI | 0.54 | 44.0 | 3.06e-01 | 88.9% | 28.0% |
| 4303957 | 2006.1.6.15 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 | 0.54 | 34.0 | 2.49e-01 | 70.4% | 22.6% |
| 3396844 | 2006.1.6.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Ku_N | 0.53 | 41.0 | 2.89e-01 | 90.7% | 23.8% |
| 1348267 | 292.2.1.5 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 | 0.52 | 43.0 | 3.70e-01 | 94.4% | 81.3% |
| 3315096 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 32.0 | 3.72e-01 | 90.7% | 100.0% |
| 3970701 | 560.1.1.0 ↗ | few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain | 0.51 | 31.0 | 3.38e-01 | 72.2% | 80.0% |
D2
medium
residues 62-94