←Back to structures
KC237729.1__AGH27936.1__phiCP51_0045__00045
Bact-VirKC237729.1__AGH27936.1__phiCP51_0045__00045
Identity
- Accession:
- KC237729 ↗
- Kingdom:
- phage
Quality
88.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-76
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7s03A01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.83 | 54.0 | 6.39e-01 | 72.2% | 96.0% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 47.0 | 4.70e-01 | 77.8% | 63.2% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 54.0 | 4.79e-01 | 94.4% | 57.3% |
| 4biuE01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.70 | 34.0 | 3.03e-01 | 88.9% | 34.7% |
| 2qbyB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 51.0 | 4.74e-01 | 79.2% | 79.1% |
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 47.0 | 4.41e-01 | 80.6% | 58.6% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.67 | 54.0 | 5.10e-01 | 90.3% | 71.9% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 47.0 | 4.24e-01 | 81.9% | 66.0% |
| 4b7hA03 | 1.20.1370.60 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › | 0.62 | 38.0 | 3.29e-01 | 93.1% | 39.1% |
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 44.0 | 4.03e-01 | 79.2% | 67.3% |
| 3nhiA02 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.57 | 40.0 | 3.18e-01 | 73.6% | 55.5% |
| 6vvoC03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.57 | 43.0 | 4.00e-01 | 81.9% | 96.7% |
| 3nz4B03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.56 | 38.0 | 3.49e-01 | 73.6% | 88.5% |
| 4ga4A01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.55 | 38.0 | 3.90e-01 | 90.3% | 76.1% |
| 5hexA01 | 3.40.367.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › | 0.53 | 42.0 | 2.87e-01 | 88.9% | 79.4% |
| 2innB00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.52 | 47.0 | 2.82e-01 | 100.0% | 30.0% |
| 1uouA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.52 | 42.0 | 4.31e-01 | 90.3% | 97.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3924434 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 55.0 | 5.42e-01 | 70.8% | 68.0% |
| 2887752 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 55.0 | 5.56e-01 | 73.6% | 80.3% |
| 3812799 | 101.1.1.291 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26175 | 0.74 | 54.0 | 5.73e-01 | 76.4% | 86.2% |
| 3971266 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 58.0 | 4.79e-01 | 84.7% | 60.0% |
| 3584520 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 53.0 | 4.60e-01 | 77.8% | 62.7% |
| 3483771 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.71 | 63.0 | 5.79e-01 | 100.0% | 98.9% |
| 4969809 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.71 | 56.0 | 4.78e-01 | 83.3% | 76.4% |
| 5079440 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.71 | 56.0 | 4.03e-01 | 84.7% | 83.1% |
| 3954386 | 101.1.1.248 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF772 | 0.68 | 46.0 | 4.01e-01 | 72.2% | 52.2% |
| 3510931 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.67 | 45.0 | 3.30e-01 | 70.8% | 26.0% |
| 4314672 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.66 | 49.0 | 4.41e-01 | 80.6% | 69.5% |
| 3627089 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.66 | 45.0 | 4.40e-01 | 70.8% | 72.5% |
| 5008722 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 46.0 | 3.08e-01 | 76.4% | 75.7% |
| 4008208 | 101.1.1.468 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Nterm_IS4 | 0.62 | 45.0 | 4.27e-01 | 76.4% | 67.1% |
| 4998703 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.61 | 44.0 | 3.04e-01 | 77.8% | 67.2% |
| 5055279 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.60 | 43.0 | 3.14e-01 | 75.0% | 80.0% |
| 5021851 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.56 | 42.0 | 2.76e-01 | 83.3% | 83.2% |
| 2337287 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.55 | 48.0 | 3.04e-01 | 100.0% | 85.0% |
| 5041141 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.52 | 41.0 | 2.90e-01 | 91.7% | 60.4% |
| 4935068 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.50 | 35.0 | 3.46e-01 | 91.7% | 69.3% |
| 3934927 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.50 | 43.0 | 3.93e-01 | 98.6% | 84.0% |
D2
medium
residues 81-123
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 3.52e-01 | 79.1% | 50.7% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 41.0 | 3.63e-01 | 83.7% | 55.6% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 43.0 | 3.07e-01 | 86.0% | 48.6% |
| 5jjiE01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 36.0 | 2.68e-01 | 72.1% | 25.7% |
| 1ti6B02 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 40.0 | 3.81e-01 | 88.4% | 93.0% |
| 2jmzA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.54 | 44.0 | 3.05e-01 | 100.0% | 33.9% |
| 3hwcA01 | 1.10.3140.10 | Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 | 0.54 | 40.0 | 2.92e-01 | 90.7% | 95.9% |
| 2fxaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 2.82e-01 | 88.4% | 42.9% |
| 2xfvA00 | 3.10.260.30 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › | 0.53 | 39.0 | 3.08e-01 | 88.4% | 48.1% |
| 3to7A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.26e-01 | 83.7% | 84.0% |
| 4i2oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.26e-01 | 88.4% | 96.2% |
| 2wtvA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.50 | 39.0 | 2.61e-01 | 86.0% | 47.1% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3933570 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.67 | 46.0 | 3.57e-01 | 74.4% | 77.0% |
| 3341478 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 38.0 | 3.98e-01 | 79.1% | 62.5% |
| 4981968 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 47.0 | 4.68e-01 | 81.4% | 84.4% |
| 4141551 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.63 | 53.0 | 2.95e-01 | 100.0% | 6.9% |
| 3782883 | 3012.1.1.8 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Ned1_M | 0.63 | 49.0 | 3.95e-01 | 90.7% | 90.0% |
| 5071019 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.63 | 52.0 | 3.17e-01 | 100.0% | 15.2% |
| 4195219 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.62 | 48.0 | 3.76e-01 | 88.4% | 51.0% |
| 5023419 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.62 | 52.0 | 2.88e-01 | 100.0% | 7.2% |
| 4634109 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.62 | 52.0 | 2.88e-01 | 100.0% | 7.2% |
| 5036096 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 46.0 | 3.53e-01 | 86.0% | 35.5% |
| 3725558 | 221.1.1.184 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF7357 | 0.62 | 44.0 | 3.12e-01 | 79.1% | 94.5% |
| 3929910 | 101.1.2.507 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 | 0.60 | 48.0 | 3.37e-01 | 93.0% | 53.5% |
| 4365970 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.60 | 46.0 | 3.53e-01 | 88.4% | 79.1% |
| 5074949 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 44.0 | 3.57e-01 | 83.7% | 81.1% |
| 3602760 | 2003.1.5.49 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_30 | 0.59 | 49.0 | 2.93e-01 | 100.0% | 31.4% |
| 4933524 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 43.0 | 3.36e-01 | 81.4% | 35.0% |
| 4253581 | 101.1.2.6 ↗ | alpha arrays › HTH › HTH › winged helix domain › GntR | 0.58 | 41.0 | 3.34e-01 | 79.1% | 75.8% |
| 4586962 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.58 | 45.0 | 3.34e-01 | 88.4% | 80.8% |
| 5077394 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.58 | 46.0 | 3.44e-01 | 90.7% | 57.4% |
| 4947701 | 101.1.2.882 ↗ | alpha arrays › HTH › HTH › winged helix domain › FeoA | 0.58 | 42.0 | 3.29e-01 | 81.4% | 37.0% |
| 4938256 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.58 | 45.0 | 3.99e-01 | 100.0% | 85.3% |
| 3596895 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.57 | 50.0 | 3.24e-01 | 100.0% | 44.6% |
| 4015202 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 44.0 | 2.92e-01 | 90.7% | 61.0% |
| 3228847 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.57 | 46.0 | 3.94e-01 | 100.0% | 88.7% |
| 3974773 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 42.0 | 3.35e-01 | 88.4% | 83.8% |
| 3505829 | 101.1.2.507 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 | 0.56 | 43.0 | 3.09e-01 | 90.7% | 58.0% |
| 5029580 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.56 | 46.0 | 2.88e-01 | 97.7% | 15.6% |
| 4022512 | 101.1.2.359 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD | 0.56 | 42.0 | 3.36e-01 | 90.7% | 81.0% |
| 4927049 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.56 | 41.0 | 3.32e-01 | 88.4% | 75.0% |
| 3520685 | 109.4.1.576 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exportin-5 | 0.55 | 42.0 | 2.48e-01 | 83.7% | 70.7% |
| 3401137 | 207.1.1.104 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_Zer-1 | 0.55 | 41.0 | 2.36e-01 | 86.0% | 10.8% |
| 3839545 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.55 | 40.0 | 2.40e-01 | 86.0% | 25.1% |
| 3997739 | 101.1.2.281 ↗ | alpha arrays › HTH › HTH › winged helix domain › Tfb2 | 0.54 | 39.0 | 2.68e-01 | 83.7% | 27.2% |
| 3730939 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.54 | 40.0 | 2.90e-01 | 83.7% | 93.8% |
| 3606375 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.54 | 42.0 | 2.74e-01 | 95.3% | 98.4% |
| 4943240 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.54 | 44.0 | 2.93e-01 | 100.0% | 36.4% |
| 3934218 | 101.1.2.281 ↗ | alpha arrays › HTH › HTH › winged helix domain › Tfb2 | 0.54 | 40.0 | 2.93e-01 | 86.0% | 37.9% |
| 5026706 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 41.0 | 3.14e-01 | 100.0% | 36.9% |
| 4944494 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 42.0 | 3.54e-01 | 100.0% | 90.0% |
| 3846614 | 109.4.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 | 0.53 | 41.0 | 2.16e-01 | 95.3% | 4.8% |
| 3746278 | 109.4.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 | 0.53 | 40.0 | 2.13e-01 | 95.3% | 4.0% |
| 3220674 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.52 | 39.0 | 2.63e-01 | 88.4% | 54.6% |
| 3725258 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 37.0 | 3.15e-01 | 88.4% | 83.3% |
| 3734352 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 2.87e-01 | 88.4% | 68.5% |
| 4166178 | 101.1.8.4 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Flp_C | 0.51 | 35.0 | 2.76e-01 | 83.7% | 26.7% |
| 3924845 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.51 | 37.0 | 2.53e-01 | 88.4% | 59.0% |
| 3933051 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.50 | 35.0 | 2.26e-01 | 93.0% | 12.8% |