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AGC65556.1
Arc-VirKC252997__AGC65556.1__HhPH1-gp31__00031
Identity
- Accession:
- KC252997 ↗
- Protein ID:
- AGC65556.1 ↗
- Kingdom:
- archaea
Quality
82.4
mean pLDDT
Taxonomy
Helvetiavirae›
Dividoviricota›
Laserviricetes›
Halopanivirales›
Sphaerolipoviridae›
Alphasphaerolipovirus›
Haloarcula_hispanica_virus_PH1
TaxID: 1282967
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-40
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4msxA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.78 | 62.0 | 4.74e-01 | 90.0% | 44.1% |
| 2d8xA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.75 | 66.0 | 5.46e-01 | 100.0% | 87.1% |
| 4fk1A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.74 | 52.0 | 3.33e-01 | 75.0% | 16.0% |
| 2dloA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.73 | 61.0 | 4.92e-01 | 97.5% | 74.1% |
| 2ffwA00 | 4.10.830.40 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › | 0.73 | 52.0 | 4.30e-01 | 80.0% | 46.2% |
| 2gatA00 | 3.30.50.10 | Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A | 0.72 | 57.0 | 4.91e-01 | 87.5% | 56.1% |
| 7yuiB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.72 | 60.0 | 4.74e-01 | 97.5% | 94.3% |
| 4ccgY00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.71 | 55.0 | 4.80e-01 | 92.5% | 70.1% |
| 1wgmA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.70 | 53.0 | 4.57e-01 | 90.0% | 52.1% |
| 1twfB08 | 3.90.1800.10 | Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain | 0.68 | 48.0 | 3.83e-01 | 77.5% | 71.8% |
| 2co8A00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.67 | 55.0 | 4.50e-01 | 97.5% | 72.0% |
| 2od1A00 | 6.10.140.2220 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 43.0 | 4.13e-01 | 85.0% | 70.0% |
| 2m85A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 46.0 | 4.01e-01 | 90.0% | 63.1% |
| 2csvA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.57 | 39.0 | 3.53e-01 | 82.5% | 50.0% |
| 1vi6C01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.55 | 43.0 | 2.86e-01 | 90.0% | 86.2% |
| 2drpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.54 | 38.0 | 4.05e-01 | 90.0% | 88.2% |
| 2eodA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 36.0 | 3.24e-01 | 70.0% | 50.0% |
| 2eqpA00 | 4.10.400.20 | Few Secondary Structures › Irregular › Low-density Lipoprotein Receptor › | 0.54 | 36.0 | 3.45e-01 | 80.0% | 52.0% |
| 4tn3A01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.54 | 38.0 | 3.88e-01 | 75.0% | 80.0% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.52 | 44.0 | 3.24e-01 | 100.0% | 47.1% |
| 2kyuA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 39.0 | 3.51e-01 | 92.5% | 95.5% |
| 2xadA00 | 3.40.50.10320 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like | 0.50 | 39.0 | 2.41e-01 | 87.5% | 79.2% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3423001 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.82 | 58.0 | 6.27e-01 | 75.0% | 100.0% |
| 3494661 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.80 | 65.0 | 5.85e-01 | 92.5% | 65.5% |
| 2650943 | 377.1.1.29 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TtuA_LIM_N | 0.79 | 57.0 | 6.05e-01 | 77.5% | 96.9% |
| 3361545 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.77 | 60.0 | 4.28e-01 | 87.5% | 30.3% |
| 3305957 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.76 | 59.0 | 5.39e-01 | 87.5% | 63.6% |
| 3353341 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.76 | 58.0 | 5.07e-01 | 87.5% | 53.8% |
| 3223228 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.75 | 61.0 | 3.63e-01 | 100.0% | 34.7% |
| 3728775 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.75 | 61.0 | 4.93e-01 | 97.5% | 50.6% |
| 3824943 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.75 | 58.0 | 4.74e-01 | 90.0% | 45.0% |
| 3822672 | 376.1.1.59 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-B_box | 0.74 | 58.0 | 5.20e-01 | 90.0% | 60.0% |
| 3376798 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.74 | 58.0 | 5.21e-01 | 90.0% | 63.3% |
| 3370897 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.74 | 58.0 | 3.99e-01 | 90.0% | 27.6% |
| 3243705 | 377.1.1.4 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › GATA | 0.73 | 55.0 | 5.15e-01 | 82.5% | 70.0% |
| 3211179 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.73 | 58.0 | 4.65e-01 | 92.5% | 48.2% |
| 3368882 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.72 | 56.0 | 5.66e-01 | 87.5% | 87.5% |
| 4161387 | 376.1.1.66 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 | 0.71 | 55.0 | 4.89e-01 | 87.5% | 65.0% |
| 3816895 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.71 | 52.0 | 5.22e-01 | 82.5% | 85.0% |
| 3801661 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.71 | 56.0 | 5.64e-01 | 90.0% | 97.5% |
| 3676361 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.71 | 54.0 | 4.57e-01 | 87.5% | 78.6% |
| 4028785 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 57.0 | 4.72e-01 | 97.5% | 53.8% |
| 3251812 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.70 | 54.0 | 5.19e-01 | 95.0% | 74.0% |
| 3311349 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.70 | 49.0 | 4.00e-01 | 75.0% | 45.3% |
| 3364276 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.69 | 54.0 | 5.11e-01 | 90.0% | 74.0% |
| 3495529 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 54.0 | 5.10e-01 | 97.5% | 76.4% |
| 3806561 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 56.0 | 4.75e-01 | 95.0% | 57.1% |
| 3759578 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.68 | 52.0 | 4.72e-01 | 90.0% | 60.0% |
| 3492870 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 51.0 | 4.76e-01 | 87.5% | 83.6% |
| 3922079 | 904.1.1.22 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box, TRIM_CC | 0.68 | 46.0 | 3.10e-01 | 72.5% | 26.7% |
| 5059659 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.67 | 48.0 | 4.88e-01 | 80.0% | 97.5% |
| 4428918 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.67 | 51.0 | 4.48e-01 | 87.5% | 56.9% |
| 3994024 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 51.0 | 4.43e-01 | 90.0% | 58.6% |
| 3276133 | 377.9.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT | 0.66 | 50.0 | 4.52e-01 | 87.5% | 58.3% |
| None | — | 0.66 | 50.0 | 4.49e-01 | 92.5% | 64.6% | |
| 3700937 | 377.9.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT | 0.65 | 49.0 | 4.94e-01 | 87.5% | 92.5% |
| 5074886 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.65 | 52.0 | 4.46e-01 | 95.0% | 88.6% |
| 5071927 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.65 | 51.0 | 4.70e-01 | 92.5% | 81.8% |
| 3935895 | 377.9.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT | 0.65 | 48.0 | 4.87e-01 | 87.5% | 87.5% |
| 3675510 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.64 | 48.0 | 4.44e-01 | 92.5% | 76.7% |
| 3417508 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.63 | 44.0 | 4.23e-01 | 77.5% | 74.0% |
| 3900532 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.63 | 48.0 | 4.27e-01 | 90.0% | 64.6% |
| 4046680 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.63 | 41.0 | 3.06e-01 | 70.0% | 26.0% |
| 3333634 | 376.1.3.24 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › NSD_PHD | 0.63 | 47.0 | 4.33e-01 | 90.0% | 75.0% |
| 4505260 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.62 | 50.0 | 3.29e-01 | 95.0% | 35.1% |
| 3863246 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.61 | 43.0 | 3.51e-01 | 87.5% | 35.8% |
| 119257 | 376.1.3.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ADD_ATRX | 0.60 | 45.0 | 4.20e-01 | 92.5% | 72.9% |
| 3685378 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.60 | 43.0 | 3.87e-01 | 80.0% | 78.3% |
| 3848798 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.60 | 47.0 | 3.70e-01 | 95.0% | 68.4% |
| 3768200 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.59 | 43.0 | 2.91e-01 | 87.5% | 17.9% |
| 3491166 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.59 | 47.0 | 3.70e-01 | 95.0% | 66.3% |
| 3879027 | 376.1.4.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › zf-B_box | 0.59 | 42.0 | 4.12e-01 | 80.0% | 73.3% |
| 3373702 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.58 | 44.0 | 4.29e-01 | 87.5% | 97.8% |
| 3309865 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.58 | 42.0 | 4.00e-01 | 82.5% | 72.0% |
| 4586962 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.57 | 38.0 | 2.72e-01 | 100.0% | 22.5% |
| 3414147 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.57 | 40.0 | 2.70e-01 | 80.0% | 15.6% |
| 3995199 | 1170.1.2.0 ↗ | beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) | 0.54 | 45.0 | 3.01e-01 | 100.0% | 30.9% |
| 2799011 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 36.0 | 3.16e-01 | 70.0% | 47.8% |
| 4980818 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 3.06e-01 | 87.5% | 61.0% |
| 4168436 | 4012.3.1.3 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI2 | 0.53 | 34.0 | 2.96e-01 | 82.5% | 40.0% |
| 4943120 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 43.0 | 3.24e-01 | 95.0% | 59.0% |
| 3378938 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.51 | 42.0 | 2.67e-01 | 100.0% | 86.3% |
| 3870529 | 386.1.1.51 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › CEP104_ZnF | 0.50 | 37.0 | 3.49e-01 | 90.0% | 67.3% |