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AGM11097.1

Arc-Vir

KC292023__AGM11097.1__HRTV4-2__00002

Identity

Accession:
KC292023 ↗
Protein ID:
AGM11097.1 ↗
Kingdom:
archaea

Quality

81.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kirjokansivirales› Haloferuviridae› Saldibavirus› Halorubrum_tailed_virus_4

TaxID: 1273752

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-48
PDB
Domain cluster: rep: IMGVR_UViG_2554235495_000004-2554235495-2556165224__D11-57
CATH (64)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.83 70.0 5.32e-01 100.0% 41.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.82 69.0 6.13e-01 100.0% 65.2%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.82 69.0 6.31e-01 100.0% 71.7%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 67.0 5.78e-01 100.0% 75.3%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 66.0 5.82e-01 100.0% 75.0%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 64.0 6.24e-01 100.0% 87.8%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.77 52.0 4.54e-01 70.5% 51.5%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 64.0 5.57e-01 100.0% 77.5%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 65.0 5.35e-01 100.0% 80.2%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 58.0 5.77e-01 100.0% 85.4%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 56.0 5.72e-01 93.2% 90.7%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 58.0 5.67e-01 100.0% 83.7%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.72 56.0 3.73e-01 86.4% 62.8%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 57.0 5.26e-01 93.2% 100.0%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.71 57.0 4.40e-01 100.0% 37.2%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 58.0 5.34e-01 100.0% 92.1%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.71 57.0 5.32e-01 100.0% 78.3%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.71 59.0 4.04e-01 97.7% 65.9%
3kihC01 2.20.25.510 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.70 48.0 5.21e-01 95.5% 94.1%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 55.0 3.20e-01 88.6% 34.2%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 52.0 4.06e-01 81.8% 97.9%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.69 57.0 5.29e-01 100.0% 78.0%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 56.0 5.26e-01 100.0% 98.2%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 53.0 5.11e-01 100.0% 98.2%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.67 54.0 5.17e-01 100.0% 85.2%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 54.0 4.83e-01 100.0% 82.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 5.03e-01 100.0% 78.5%
4iauA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.66 41.0 3.47e-01 100.0% 35.9%
1l1oF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 49.0 3.66e-01 88.6% 69.5%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 52.0 4.76e-01 100.0% 98.5%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 52.0 4.54e-01 100.0% 73.7%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 53.0 4.94e-01 100.0% 93.3%
7r3mA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 4.50e-01 100.0% 72.0%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.64 51.0 4.06e-01 100.0% 78.7%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 51.0 4.87e-01 100.0% 98.2%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.63 52.0 4.57e-01 100.0% 86.1%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.63 50.0 4.71e-01 93.2% 85.5%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 4.23e-01 100.0% 65.5%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.63 51.0 3.84e-01 93.2% 81.4%
2dlpA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 50.0 4.25e-01 100.0% 68.2%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 48.0 2.84e-01 95.5% 59.4%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 47.0 3.59e-01 81.8% 77.5%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 4.32e-01 100.0% 85.3%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 42.0 3.46e-01 77.3% 96.7%
4trtA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.60 45.0 3.44e-01 86.4% 90.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.60 48.0 4.65e-01 100.0% 86.5%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 48.0 4.56e-01 97.7% 96.5%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 4.41e-01 100.0% 70.3%
2gy5A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 3.40e-01 81.8% 87.9%
2edgA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 43.0 3.25e-01 88.6% 66.9%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 3.60e-01 100.0% 57.3%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.57 44.0 3.58e-01 97.7% 42.1%
3n6rA04 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 45.0 4.00e-01 93.2% 91.3%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.55 46.0 3.82e-01 100.0% 87.1%
3f0zA01 3.30.310.260 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.55 43.0 3.33e-01 90.9% 85.7%
8f5dA05 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.55 43.0 2.85e-01 93.2% 78.3%
2ejmA01 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 44.0 3.90e-01 93.2% 92.6%
2dn8A01 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 44.0 3.87e-01 95.5% 87.5%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.55 47.0 3.79e-01 100.0% 62.0%
1z6hA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 42.0 3.70e-01 90.9% 86.1%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.54 46.0 4.10e-01 100.0% 72.3%
3p3yA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.16e-01 81.8% 91.0%
1k8mA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 37.0 3.23e-01 88.6% 67.8%
1sb2B00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 40.0 3.09e-01 100.0% 82.3%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4964211 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.89 81.0 7.75e-01 100.0% 96.0%
4221708 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.81 70.0 6.04e-01 100.0% 71.4%
145704 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.80 65.0 6.01e-01 100.0% 70.7%
3604145 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 67.0 6.14e-01 100.0% 71.7%
5045214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 67.0 5.87e-01 100.0% 70.0%
4953913 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.79 67.0 6.15e-01 100.0% 73.3%
4139778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 65.0 5.66e-01 100.0% 65.8%
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 64.0 5.73e-01 100.0% 66.2%
4973749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 64.0 5.60e-01 100.0% 61.4%
4963111 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.76 60.0 5.97e-01 100.0% 88.9%
4985969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 62.0 5.72e-01 100.0% 73.3%
4212091 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 61.0 5.48e-01 100.0% 72.3%
5057579 5.1.4.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.71 58.0 3.36e-01 90.9% 19.0%
3263489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.38e-01 100.0% 87.7%
3391741 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.70 47.0 2.99e-01 70.5% 24.4%
3494530 5.1.4.155 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MIOS_WD40 0.70 56.0 3.35e-01 90.9% 23.5%
4269668 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.69 57.0 5.31e-01 93.2% 100.0%
3788416 5.1.4.155 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MIOS_WD40 0.68 55.0 3.18e-01 90.9% 18.0%
3785900 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 57.0 3.31e-01 100.0% 31.6%
3186993 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 4.34e-01 100.0% 62.9%
3289254 220.1.1.82 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.67 51.0 4.12e-01 88.6% 84.2%
3519861 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 55.0 5.11e-01 100.0% 83.3%
4564227 3600.1.1.4 ↗ alpha bundles › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › Exonuc_VII_L 0.67 45.0 3.22e-01 70.5% 34.4%
3289164 295.1.1.25 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF397 0.67 53.0 4.10e-01 93.2% 90.0%
4031509 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 4.94e-01 100.0% 73.3%
540 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.66 55.0 5.41e-01 100.0% 93.8%
2575643 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.66 55.0 4.87e-01 100.0% 65.2%
3539094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 53.0 4.58e-01 100.0% 80.0%
3782293 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.66 51.0 4.90e-01 100.0% 76.4%
3586825 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 53.0 3.18e-01 93.2% 25.7%
4937731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 4.92e-01 100.0% 78.3%
4644007 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.66 54.0 5.02e-01 100.0% 83.1%
3260669 5.1.4.155 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MIOS_WD40 0.66 53.0 3.08e-01 93.2% 24.8%
4941620 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 4.90e-01 100.0% 85.0%
5029655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.91e-01 100.0% 85.0%
4467360 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 4.87e-01 100.0% 81.7%
3923675 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 51.0 4.68e-01 100.0% 90.8%
4999513 244.2.1.11 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 0.64 45.0 4.40e-01 77.3% 90.0%
3507338 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 4.87e-01 100.0% 80.0%
4484893 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 4.72e-01 100.0% 78.5%
1175057 4.1.1.145 ↗ beta barrels › SH3 › SH3 › SH3 › Crb2_Tudor 0.63 52.0 4.31e-01 100.0% 70.5%
3525376 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 50.0 4.59e-01 100.0% 89.2%
3584429 391.1.2.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.62 47.0 3.33e-01 81.8% 63.0%
3180987 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.62 50.0 2.85e-01 88.6% 82.3%
2388307 4.16.1.1 ↗ beta barrels › SH3 › PhtA domain-like › PhtA domain-like › Strep_his_triad 0.61 49.0 4.29e-01 95.5% 74.6%
5061768 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 45.0 3.85e-01 84.1% 88.0%
4995080 325.1.7.1 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl 0.58 44.0 4.27e-01 84.1% 84.0%
1283866 220.1.1.51 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP3_C 0.58 48.0 3.60e-01 100.0% 57.3%
4023915 220.1.1.53 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C 0.57 47.0 3.62e-01 100.0% 70.4%
4021352 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 46.0 3.88e-01 93.2% 90.0%
3827152 325.1.7.1 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl 0.56 45.0 3.76e-01 93.2% 75.0%
4449307 375.13.1.0 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain 0.53 44.0 4.06e-01 100.0% 71.7%