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AGM11106.1
Arc-VirKC292023__AGM11106.1__HRTV4-12__00012
Identity
- Accession:
- KC292023 ↗
- Protein ID:
- AGM11106.1 ↗
- Kingdom:
- archaea
Quality
66.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Kirjokansivirales›
Haloferuviridae›
Saldibavirus›
Halorubrum_tailed_virus_4
TaxID: 1273752
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-76
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gdtB03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.89 | 54.0 | 6.42e-01 | 75.8% | 86.7% |
| 1k78A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.87 | 61.0 | 5.98e-01 | 72.6% | 77.3% |
| 1tc3C00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.85 | 57.0 | 6.22e-01 | 83.9% | 84.3% |
| 2e18A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.82 | 53.0 | 3.38e-01 | 75.8% | 16.0% |
| 4a0zA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 50.0 | 5.14e-01 | 75.8% | 71.2% |
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 53.0 | 5.61e-01 | 79.0% | 92.7% |
| 3keoA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 41.0 | 3.96e-01 | 75.8% | 62.5% |
| 1khyD00 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.53 | 37.0 | 2.90e-01 | 75.8% | 44.6% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028266 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.93 | 58.0 | 6.00e-01 | 75.8% | 67.8% |
| 3603167 | 101.1.1.17 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 | 0.91 | 60.0 | 5.89e-01 | 79.0% | 64.6% |
| 4979402 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.90 | 60.0 | 6.14e-01 | 83.9% | 71.7% |
| 5014141 | 101.1.1.17 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 | 0.89 | 59.0 | 6.53e-01 | 77.4% | 84.0% |
| 3904156 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.89 | 57.0 | 6.54e-01 | 74.2% | 91.1% |
| 3794969 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.88 | 57.0 | 6.28e-01 | 71.0% | 82.0% |
| 4008322 | 101.1.1.17 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 | 0.88 | 58.0 | 6.15e-01 | 77.4% | 76.4% |
| 3789627 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.88 | 60.0 | 5.95e-01 | 71.0% | 80.0% |
| 4990647 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.87 | 60.0 | 6.36e-01 | 79.0% | 80.0% |
| 4952035 | 101.1.1.17 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 | 0.85 | 56.0 | 5.69e-01 | 74.2% | 70.0% |
| 3590732 | 101.1.1.364 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_49 | 0.84 | 52.0 | 5.97e-01 | 75.8% | 86.7% |
| 4002905 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 59.0 | 5.79e-01 | 88.7% | 69.2% |
| 3925603 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.82 | 52.0 | 5.71e-01 | 75.8% | 80.0% |
| 4010017 | 101.1.1.68 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 | 0.82 | 54.0 | 5.18e-01 | 74.2% | 60.0% |
| 3988724 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 57.0 | 5.84e-01 | 79.0% | 76.7% |
| 3590546 | 101.1.1.17 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 | 0.80 | 52.0 | 5.57e-01 | 77.4% | 77.8% |
| 3932988 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 50.0 | 5.28e-01 | 75.8% | 72.7% |
| 5061884 | 101.1.2.887 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF1670 | 0.77 | 59.0 | 4.29e-01 | 82.3% | 66.9% |
| 4998605 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.76 | 57.0 | 4.54e-01 | 77.4% | 57.3% |
| 3783362 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.76 | 53.0 | 3.00e-01 | 79.0% | 7.1% |
| 4939690 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.76 | 58.0 | 4.78e-01 | 79.0% | 55.0% |
| 5063318 | 101.1.6.12 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_23 | 0.76 | 57.0 | 6.08e-01 | 77.4% | 89.1% |
| 4967740 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 56.0 | 5.92e-01 | 87.1% | 89.1% |
| 3410877 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 50.0 | 4.88e-01 | 83.9% | 64.3% |
| 4659976 | 101.1.1.25 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF433 | 0.70 | 52.0 | 3.89e-01 | 79.0% | 39.2% |