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AGM11122.1
Arc-VirKC292023__AGM11122.1__HRTV4-29__00029
Identity
- Accession:
- KC292023 ↗
- Protein ID:
- AGM11122.1 ↗
- Kingdom:
- archaea
Quality
71.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Kirjokansivirales›
Haloferuviridae›
Saldibavirus›
Halorubrum_tailed_virus_4
TaxID: 1273752
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-58
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5vmzA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.80 | 44.0 | 4.94e-01 | 100.0% | 71.8% |
| 2ysiA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.68 | 40.0 | 4.48e-01 | 98.1% | 87.9% |
| 1twfI01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.64 | 43.0 | 4.52e-01 | 96.2% | 78.3% |
| 2mdiA00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.57 | 45.0 | 4.44e-01 | 92.3% | 83.9% |
| 3ef2A02 | 3.30.460.70 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.56 | 42.0 | 3.15e-01 | 82.7% | 64.5% |
| 3kstA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 45.0 | 2.87e-01 | 96.2% | 93.5% |
| 1yuaA02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 42.0 | 4.14e-01 | 100.0% | 75.9% |
| 4wi1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.51 | 43.0 | 3.36e-01 | 100.0% | 79.7% |
| 1ob8A00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 43.0 | 3.41e-01 | 100.0% | 63.9% |
| 2j3lA01 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.51 | 43.0 | 3.48e-01 | 100.0% | 82.3% |
| 1itxA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 37.0 | 3.41e-01 | 82.7% | 84.9% |
| 5m8cB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 41.0 | 2.58e-01 | 96.2% | 35.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.82 | 47.0 | 4.72e-01 | 100.0% | 56.6% | |
| 3239607 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.72 | 42.0 | 4.86e-01 | 98.1% | 85.7% |
| 3605636 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.72 | 42.0 | 4.18e-01 | 98.1% | 54.5% |
| 3472289 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.71 | 43.0 | 5.00e-01 | 100.0% | 91.4% |
| 3935682 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.71 | 42.0 | 4.05e-01 | 100.0% | 51.7% |
| 3497020 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.70 | 43.0 | 4.65e-01 | 98.1% | 74.4% |
| 3404585 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.70 | 42.0 | 4.34e-01 | 100.0% | 62.0% |
| 3190898 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.70 | 43.0 | 4.74e-01 | 98.1% | 80.0% |
| 3253246 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.69 | 41.0 | 4.74e-01 | 98.1% | 100.0% |
| 3416458 | 386.1.1.259 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 | 0.68 | 42.0 | 4.46e-01 | 100.0% | 71.1% |
| 3403173 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.68 | 41.0 | 4.75e-01 | 98.1% | 91.4% |
| 3415739 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.67 | 40.0 | 4.68e-01 | 100.0% | 88.6% |
| 3705154 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.67 | 42.0 | 4.62e-01 | 98.1% | 82.5% |
| 3593875 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 44.0 | 4.32e-01 | 96.2% | 65.5% |
| 4960549 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 44.0 | 4.51e-01 | 96.2% | 74.0% |
| 3505640 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.62 | 41.0 | 3.97e-01 | 96.2% | 60.0% |
| 3500033 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 40.0 | 4.14e-01 | 96.2% | 72.0% |
| 3612107 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.60 | 41.0 | 3.97e-01 | 96.2% | 63.3% |
| 3901340 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 37.0 | 3.65e-01 | 100.0% | 61.8% |
| 3356611 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.55 | 38.0 | 3.81e-01 | 94.2% | 69.1% |
| 996859 | 375.8.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta | 0.54 | 37.0 | 3.59e-01 | 98.1% | 63.3% |
| 3595141 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.50 | 42.0 | 2.86e-01 | 100.0% | 32.6% |
| 3976063 | 209.1.1.6 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › InvE_AD | 0.50 | 40.0 | 3.11e-01 | 96.2% | 62.2% |