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AGM11135.1
Arc-VirKC292023__AGM11135.1__HRTV4-43__00043
Identity
- Accession:
- KC292023 ↗
- Protein ID:
- AGM11135.1 ↗
- Kingdom:
- archaea
Quality
62.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Kirjokansivirales›
Haloferuviridae›
Saldibavirus›
Halorubrum_tailed_virus_4
TaxID: 1273752
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-58
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ihjA02 | 1.10.287.1970 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 49.0 | 5.18e-01 | 88.9% | 97.4% |
| 1z6oM00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.65 | 45.0 | 2.95e-01 | 73.3% | 67.0% |
| 1ignB02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 51.0 | 4.18e-01 | 100.0% | 81.5% |
| 2kxpA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.61 | 49.0 | 3.87e-01 | 97.8% | 50.5% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.58 | 43.0 | 3.45e-01 | 88.9% | 69.4% |
| 3ljkA03 | 1.10.1390.10 | Mainly Alpha › Orthogonal Bundle › Phosphoglucose isomerase, C-terminal domain › | 0.58 | 40.0 | 4.25e-01 | 88.9% | 87.2% |
| 1eteA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.57 | 41.0 | 3.08e-01 | 80.0% | 70.1% |
| 5cqgA03 | 1.10.10.2210 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 41.0 | 3.57e-01 | 88.9% | 79.7% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.53 | 37.0 | 3.06e-01 | 77.8% | 64.1% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 224511 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.53 | 43.0 | 3.61e-01 | 100.0% | 88.6% |
| 3347400 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.52 | 41.0 | 2.48e-01 | 95.6% | 84.2% |
| 1807499 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.51 | 40.0 | 3.08e-01 | 100.0% | 52.7% |