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AGM11144.1
Arc-VirKC292023__AGM11144.1__HRTV4-52__00052
Identity
- Accession:
- KC292023 ↗
- Protein ID:
- AGM11144.1 ↗
- Kingdom:
- archaea
Quality
71.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Kirjokansivirales›
Haloferuviridae›
Saldibavirus›
Halorubrum_tailed_virus_4
TaxID: 1273752
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-121
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a5zD02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 24.0 | 2.88e-01 | 75.0% | 56.2% |
| 3cuqB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 28.0 | 3.34e-01 | 100.0% | 73.9% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.51 | 26.0 | 3.33e-01 | 71.2% | 100.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5038361 | 4294.1.1.13 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_ribbon_TFIIB | 0.66 | 30.0 | 4.41e-01 | 74.0% | 100.0% |
| 3386843 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.64 | 26.0 | 3.41e-01 | 76.0% | 65.0% |
| 5030311 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 31.0 | 4.19e-01 | 77.9% | 90.9% |
| 4971829 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.52 | 27.0 | 3.16e-01 | 99.0% | 71.4% |
| 4961779 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 28.0 | 3.26e-01 | 100.0% | 74.3% |
| 4930183 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.51 | 26.0 | 2.93e-01 | 99.0% | 60.0% |
| 3816553 | 4.1.1.306 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N | 0.51 | 25.0 | 3.16e-01 | 80.8% | 83.6% |
| 4972400 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 24.0 | 3.17e-01 | 80.8% | 95.6% |