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AGM11171.1
Arc-VirKC292024__AGM11171.1__HHTV2-4__00004
Identity
- Accession:
- KC292024 ↗
- Protein ID:
- AGM11171.1 ↗
- Kingdom:
- archaea
Quality
88.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Saparoviridae›
Halohivirus›
Haloarcula_hispanica_tailed_virus_2
TaxID: 1273751
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-88
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aisB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.86 | 79.0 | 7.53e-01 | 100.0% | 85.1% |
| 1c9bA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.85 | 77.0 | 7.01e-01 | 100.0% | 75.5% |
| 4bbrM00 | 1.10.472.170 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.82 | 74.0 | 5.49e-01 | 100.0% | 41.5% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.80 | 74.0 | 6.81e-01 | 100.0% | 80.6% |
| 1w98B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.79 | 74.0 | 6.57e-01 | 100.0% | 77.2% |
| 2ivxB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.77 | 71.0 | 6.32e-01 | 100.0% | 75.7% |
| 1vinA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.74 | 67.0 | 5.56e-01 | 100.0% | 59.0% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.70 | 51.0 | 4.15e-01 | 75.9% | 76.7% |
| 2pmiB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.68 | 62.0 | 4.56e-01 | 100.0% | 53.5% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 37.0 | 4.20e-01 | 74.7% | 69.8% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.67 | 51.0 | 5.38e-01 | 80.7% | 100.0% |
| 1fc3B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 48.0 | 4.54e-01 | 84.3% | 89.1% |
| 1hw1A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 38.0 | 3.97e-01 | 100.0% | 72.0% |
| 4h0eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 38.0 | 4.13e-01 | 98.8% | 78.6% |
| 7cjsB01 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.57 | 36.0 | 2.70e-01 | 92.8% | 24.9% |
| 2hjmA01 | 1.20.120.460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like | 0.55 | 45.0 | 4.49e-01 | 92.8% | 95.3% |
| 8amzO01 | 1.25.40.570 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 41.0 | 2.81e-01 | 100.0% | 20.0% |
| 3f8mA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 4.10e-01 | 84.3% | 92.3% |
| 4r2bA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 39.0 | 3.00e-01 | 78.3% | 76.3% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.52 | 39.0 | 4.02e-01 | 80.7% | 91.1% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.52 | 46.0 | 4.21e-01 | 100.0% | 89.1% |
| 1kxpD03 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.52 | 39.0 | 3.90e-01 | 83.1% | 98.9% |
| 2gauA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.91e-01 | 88.0% | 82.7% |
| 4i2oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.65e-01 | 85.5% | 77.5% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3830022 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.85 | 75.0 | 6.67e-01 | 97.6% | 70.0% |
| 3344342 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.84 | 78.0 | 7.01e-01 | 100.0% | 74.5% |
| 3932067 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.84 | 80.0 | 7.12e-01 | 100.0% | 75.5% |
| 3311361 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.84 | 74.0 | 6.63e-01 | 100.0% | 70.9% |
| 4028884 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.83 | 78.0 | 6.88e-01 | 100.0% | 75.7% |
| 5078735 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.83 | 76.0 | 7.28e-01 | 100.0% | 86.3% |
| 5042712 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.82 | 77.0 | 7.04e-01 | 100.0% | 88.6% |
| 5064400 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.82 | 75.0 | 7.16e-01 | 98.8% | 85.3% |
| 3600574 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.82 | 76.0 | 5.94e-01 | 100.0% | 57.6% |
| 3433370 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.81 | 76.0 | 7.26e-01 | 100.0% | 88.3% |
| 5036215 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.81 | 75.0 | 6.76e-01 | 100.0% | 91.8% |
| 5022190 | 101.1.10.83 ↗ | alpha arrays › HTH › HTH › Cyclin-like › DUF6398 | 0.81 | 74.0 | 6.40e-01 | 100.0% | 70.4% |
| 5050239 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.81 | 67.0 | 6.96e-01 | 94.0% | 94.9% |
| 4991128 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.80 | 76.0 | 7.18e-01 | 100.0% | 91.6% |
| 4485423 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.80 | 74.0 | 6.45e-01 | 100.0% | 69.2% |
| 4189017 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.79 | 74.0 | 6.13e-01 | 100.0% | 64.5% |
| 3901205 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.79 | 72.0 | 6.43e-01 | 100.0% | 72.2% |
| 5048634 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.78 | 72.0 | 6.40e-01 | 100.0% | 91.3% |
| 3909225 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.78 | 71.0 | 6.46e-01 | 100.0% | 83.6% |
| 3622768 | 101.1.10.13 ↗ | alpha arrays › HTH › HTH › Cyclin-like › DUF3452 | 0.76 | 69.0 | 6.12e-01 | 98.8% | 76.5% |
| 3390609 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.75 | 68.0 | 5.24e-01 | 100.0% | 53.0% |
| 3252643 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.75 | 68.0 | 5.29e-01 | 100.0% | 52.0% |
| 4955900 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.75 | 68.0 | 6.67e-01 | 100.0% | 100.0% |
| 3477001 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.74 | 68.0 | 5.53e-01 | 100.0% | 72.7% |
| 4991127 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.74 | 68.0 | 6.14e-01 | 100.0% | 75.5% |
| 3783816 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.73 | 64.0 | 5.90e-01 | 100.0% | 83.6% |
| 3937336 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.72 | 64.0 | 5.64e-01 | 98.8% | 75.0% |
| 4976369 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.71 | 64.0 | 5.73e-01 | 100.0% | 73.9% |
| 5073852 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.71 | 63.0 | 5.49e-01 | 100.0% | 68.0% |
| 4481405 | 604.39.1.30 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › SpoIIE_N | 0.70 | 57.0 | 4.82e-01 | 88.0% | 76.3% |
| 3711858 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 54.0 | 4.74e-01 | 100.0% | 94.4% |
| 3321734 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.57 | 47.0 | 4.34e-01 | 96.4% | 91.3% |
| 3940560 | 371.1.1.0 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 | 0.56 | 44.0 | 4.10e-01 | 88.0% | 75.2% |
| 3297600 | 621.1.1.7 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › EMC6 | 0.53 | 37.0 | 3.59e-01 | 73.5% | 69.0% |
| 3613552 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 40.0 | 3.07e-01 | 78.3% | 49.4% |
| 5047158 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 38.0 | 3.69e-01 | 78.3% | 82.1% |
| 3782436 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.52 | 36.0 | 3.69e-01 | 72.3% | 85.0% |
| 5061118 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.51 | 38.0 | 3.37e-01 | 79.5% | 63.7% |
| 4999686 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.51 | 38.0 | 3.97e-01 | 78.3% | 92.0% |
| 3807513 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.51 | 40.0 | 3.59e-01 | 92.8% | 70.4% |