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AGM11184.1

Arc-Vir

KC292024__AGM11184.1__HHTV2-19__00019

Identity

Accession:
KC292024 ↗
Protein ID:
AGM11184.1 ↗
Kingdom:
archaea

Quality

82.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saparoviridae› Halohivirus› Haloarcula_hispanica_tailed_virus_2

TaxID: 1273751

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vwxp00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 52.0 4.29e-01 100.0% 46.2%
5flxf00 6.20.50.150 Special › Other non-globular › N-terminal domain of TfIIb › 0.67 44.0 3.98e-01 98.0% 47.9%
2k4xA01 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.64 39.0 4.35e-01 86.0% 85.7%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.59 51.0 4.63e-01 98.0% 95.6%
2nutA02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.58 42.0 4.04e-01 100.0% 67.2%
1vq8300 3.10.450.80 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 3.97e-01 96.0% 85.9%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.56 42.0 4.00e-01 100.0% 67.7%
4jb9H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.32e-01 88.0% 80.2%
3mhsA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 39.0 2.99e-01 78.0% 37.8%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 38.0 3.10e-01 74.0% 49.5%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.54 43.0 3.46e-01 92.0% 85.8%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 45.0 3.06e-01 100.0% 93.5%
3zgzD04 2.20.28.290 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 39.0 3.76e-01 100.0% 72.6%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3718693 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 59.0 6.10e-01 94.0% 100.0%
3415237 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 52.0 3.44e-01 100.0% 18.6%
3218547 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.71 45.0 4.69e-01 74.0% 71.1%
3358110 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 56.0 5.83e-01 98.0% 97.8%
3689283 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.68 59.0 4.88e-01 100.0% 58.1%
3168651 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.68 47.0 4.74e-01 96.0% 74.0%
3478884 4224.1.1.1 ↗ few secondary structure elements › CHY zinc finger › CHY zinc finger › CHY zinc finger › zf-CHY 0.65 45.0 3.99e-01 74.0% 65.3%
4359679 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.65 53.0 4.88e-01 100.0% 77.1%
3620075 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.63 51.0 4.37e-01 100.0% 56.8%
3402054 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.60 42.0 4.00e-01 94.0% 61.7%
3403430 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.59 44.0 4.29e-01 80.0% 81.8%
4945930 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 51.0 5.11e-01 96.0% 96.0%
3230993 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.58 43.0 4.23e-01 80.0% 76.4%
3823407 386.1.1.14 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-LYAR 0.58 41.0 3.94e-01 76.0% 75.0%
None — 0.57 41.0 4.28e-01 76.0% 100.0%
3921354 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.57 42.0 3.88e-01 80.0% 64.6%
4011230 375.4.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like 0.56 43.0 4.36e-01 84.0% 86.0%
4962274 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 45.0 4.70e-01 92.0% 100.0%
3801683 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.56 39.0 3.11e-01 74.0% 64.8%
4104506 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.55 44.0 4.56e-01 94.0% 100.0%
4002059 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 46.0 4.19e-01 96.0% 73.9%
3422037 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.54 36.0 3.14e-01 72.0% 56.5%
3737810 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 42.0 3.88e-01 100.0% 66.7%