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AGM11327.1

Arc-Vir

KC292025__AGM11327.1__HHTV1-74__00074

Identity

Accession:
KC292025 ↗
Protein ID:
AGM11327.1 ↗
Kingdom:
archaea

Quality

94.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Madisaviridae› Clampvirus› Haloarcula_hispanica_tailed_virus_1

TaxID: 1273750

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-73
PDB
Domain cluster: rep: IMGVR_UViG_3300045988_180032-3300045988-Ga0495776_068882_40536_40739__D2-66
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t62B00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.80 72.0 5.54e-01 100.0% 52.8%
3s9xA00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.78 70.0 5.42e-01 100.0% 56.0%
1sgvA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.76 49.0 5.24e-01 93.2% 76.2%
1r3eA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.76 64.0 6.14e-01 95.9% 79.8%
3cr8A01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.75 60.0 4.81e-01 86.3% 67.4%
2dp9A01 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.75 63.0 5.71e-01 100.0% 69.0%
3vseA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.74 57.0 5.84e-01 93.2% 85.5%
3w0eA00 3.30.10.10 Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A 0.73 35.0 3.70e-01 71.2% 51.5%
2apoA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.71 60.0 5.43e-01 94.5% 67.7%
3zv0C01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.71 61.0 4.75e-01 95.9% 44.7%
1q7hA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.71 59.0 5.64e-01 93.2% 77.9%
2gksB01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.70 61.0 4.92e-01 95.9% 87.9%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.70 53.0 5.53e-01 95.9% 87.9%
3c0kA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.70 54.0 5.52e-01 97.3% 85.9%
2as0A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.70 53.0 5.40e-01 94.5% 84.3%
2p38A02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.69 52.0 5.49e-01 97.3% 90.8%
1te7A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.69 60.0 5.33e-01 100.0% 68.0%
4dmgA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.68 51.0 5.16e-01 95.9% 80.6%
2j5vA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.68 59.0 5.41e-01 95.9% 90.4%
2ymaA00 3.10.310.60 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.68 48.0 3.91e-01 74.0% 54.1%
5zveA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.68 57.0 5.44e-01 95.9% 79.1%
1sqwA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.68 57.0 5.51e-01 97.3% 83.1%
1iq8A04 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.66 56.0 5.50e-01 97.3% 87.2%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.60 46.0 4.24e-01 82.2% 78.9%
4ftfA00 3.30.300.250 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.59 42.0 3.67e-01 74.0% 56.9%
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.58 32.0 3.12e-01 71.2% 48.8%
3i8nB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 42.0 3.51e-01 98.6% 44.4%
2gjwC01 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 34.0 2.78e-01 71.2% 32.1%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.55 31.0 2.95e-01 71.2% 45.5%
3oi8A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 32.0 3.04e-01 72.6% 46.2%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 40.0 3.33e-01 98.6% 44.9%
3kpbA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 38.0 3.21e-01 98.6% 44.5%
4wu3A02 3.30.70.1690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.70e-01 76.7% 94.1%
1ta9B01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 36.0 2.97e-01 72.6% 59.2%
3kxrA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 36.0 3.04e-01 90.4% 41.3%
1odfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 2.93e-01 94.5% 89.3%
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 40.0 2.54e-01 91.8% 89.1%
2nwhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 40.0 2.72e-01 89.0% 39.1%
1vr9A02 3.10.20.750 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 35.0 3.92e-01 95.9% 96.4%
2yziB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 37.0 3.04e-01 98.6% 42.2%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5070577 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.86 79.0 6.79e-01 100.0% 71.8%
4155252 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.83 77.0 6.75e-01 100.0% 72.4%
5022429 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.83 77.0 6.30e-01 100.0% 59.2%
4105843 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.82 54.0 6.12e-01 75.3% 89.1%
4995643 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.81 73.0 5.81e-01 100.0% 52.4%
4048693 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.79 57.0 5.81e-01 75.3% 78.6%
3603793 1.1.9.17 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.79 57.0 5.81e-01 75.3% 84.3%
4970789 1.1.9.7 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.79 70.0 5.66e-01 100.0% 55.7%
4262578 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.78 57.0 5.99e-01 76.7% 84.6%
3600186 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.77 57.0 5.23e-01 78.1% 68.4%
4054728 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.77 55.0 5.94e-01 95.9% 90.0%
4932437 1.1.9.14 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 0.77 67.0 6.39e-01 95.9% 98.8%
4133629 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.77 53.0 5.84e-01 93.2% 88.3%
4312009 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.76 55.0 5.68e-01 76.7% 87.1%
162 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.76 64.0 6.35e-01 95.9% 87.0%
4453731 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.76 67.0 6.01e-01 97.3% 78.0%
4932684 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.76 64.0 6.37e-01 95.9% 88.0%
4558844 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.75 54.0 5.72e-01 78.1% 84.6%
4165251 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.75 55.0 5.82e-01 95.9% 87.7%
4564300 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.75 67.0 6.48e-01 97.3% 87.5%
4564336 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.74 52.0 5.63e-01 94.5% 88.3%
869287 1.1.9.17 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.74 57.0 5.78e-01 93.2% 83.1%
3480390 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.74 64.0 5.92e-01 93.2% 84.4%
4582116 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.74 55.0 5.77e-01 94.5% 87.7%
4149342 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.74 60.0 6.15e-01 95.9% 90.0%
4204421 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.74 52.0 5.60e-01 95.9% 88.3%
4498362 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.74 63.0 5.72e-01 95.9% 70.5%
2391027 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.73 65.0 5.03e-01 100.0% 69.6%
4977675 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.73 63.0 5.75e-01 95.9% 71.6%
3394318 1.1.9.34 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF26292 0.73 63.0 6.00e-01 94.5% 88.2%
4977465 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.72 63.0 5.88e-01 95.9% 82.2%
4620744 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.72 50.0 5.38e-01 95.9% 86.7%
5011405 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.72 55.0 5.61e-01 95.9% 84.3%
5037242 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.72 62.0 5.26e-01 95.9% 59.1%
5011041 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.72 62.0 5.86e-01 95.9% 80.0%
4361032 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.72 56.0 5.76e-01 95.9% 87.1%
4943383 1.1.9.53 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › Methyltr_RsmB-F 0.72 60.0 5.51e-01 95.9% 70.5%
4584469 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.72 56.0 5.71e-01 97.3% 87.1%
3590925 1.1.9.17 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.72 53.0 5.54e-01 93.2% 87.7%
4963284 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.71 58.0 5.79e-01 95.9% 86.5%
5054628 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.71 61.0 5.78e-01 97.3% 80.0%
4945851 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.71 60.0 5.58e-01 95.9% 74.4%
4928397 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.71 61.0 5.04e-01 95.9% 54.8%
4370928 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.71 51.0 5.41e-01 95.9% 87.5%
4632972 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.71 56.0 5.79e-01 94.5% 91.2%
3886687 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.70 60.0 5.64e-01 97.3% 76.7%
187 1.1.9.17 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.70 54.0 5.47e-01 95.9% 83.3%
186 1.1.9.17 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.70 53.0 5.47e-01 95.9% 85.3%
4990786 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.70 58.0 4.62e-01 97.3% 44.7%
3666657 1.1.9.17 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.70 55.0 5.07e-01 94.5% 65.3%
5045765 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.70 59.0 5.85e-01 93.2% 89.3%
4480273 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.70 52.0 5.50e-01 94.5% 89.2%
3196538 294.1.1.2 ↗ a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › Inhibitor_I78 0.70 34.0 3.58e-01 71.2% 50.7%
4585687 1.1.9.17 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.70 55.0 5.50e-01 97.3% 82.7%
4949393 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.69 59.0 5.54e-01 95.9% 75.6%
3595077 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.69 63.0 5.49e-01 100.0% 83.3%
4927245 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.69 62.0 5.66e-01 98.6% 89.5%
4996509 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.69 56.0 5.62e-01 91.8% 86.7%
4979562 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.69 59.0 5.88e-01 95.9% 90.7%
3254542 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.69 60.0 5.48e-01 97.3% 89.5%
5071049 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.69 58.0 5.80e-01 97.3% 90.7%
4948219 1.1.9.54 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PAPS_reduct 0.68 57.0 5.72e-01 94.5% 89.3%
4101732 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.68 54.0 5.51e-01 94.5% 88.6%
4956000 1.1.9.17 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.68 51.0 5.26e-01 86.3% 84.3%
4971606 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.68 57.0 5.33e-01 95.9% 75.6%
4943208 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.68 57.0 5.73e-01 95.9% 90.7%
4995416 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.68 55.0 5.48e-01 95.9% 85.3%
5051591 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.68 57.0 5.59e-01 97.3% 85.0%
4975602 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.67 58.0 5.63e-01 95.9% 86.3%
5077746 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.67 56.0 5.56e-01 97.3% 87.2%
4950281 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.67 57.0 5.69e-01 95.9% 92.0%
4167855 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.66 56.0 5.60e-01 97.3% 90.7%
4976672 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 52.0 5.34e-01 94.5% 90.0%
5024403 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.65 54.0 5.33e-01 97.3% 85.0%
5022982 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.65 54.0 5.36e-01 93.2% 89.3%
5056299 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.59 40.0 3.37e-01 98.6% 40.8%
3643123 3676.1.1.0 ↗ alpha duplicates or obligate multimers › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain 0.55 35.0 2.33e-01 79.5% 14.2%
4948558 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 38.0 3.64e-01 75.3% 65.9%
5077917 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.51 37.0 3.25e-01 78.1% 70.8%