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AGM11338.1

Arc-Vir

KC292026__AGM11338.1__HGTV1-8__00008

Identity

Accession:
KC292026 ↗
Protein ID:
AGM11338.1 ↗
Kingdom:
archaea

Quality

87.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Halomagnusviridae› Hagravirus› Halogranum_tailed_virus_1

TaxID: 1273749

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-95
PDB
Domain cluster: rep: NC_048756.1__YP_009844620.1__HWC12_gp017__00017__D110-172
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 56.0 5.70e-01 100.0% 71.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 60.0 6.36e-01 100.0% 87.1%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.79 50.0 5.96e-01 97.1% 93.8%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 57.0 5.75e-01 100.0% 76.5%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 58.0 6.22e-01 98.6% 89.8%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 50.0 4.54e-01 95.7% 53.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 54.0 6.01e-01 100.0% 94.6%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 54.0 5.37e-01 98.6% 74.6%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 55.0 6.07e-01 100.0% 100.0%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 57.0 5.70e-01 100.0% 80.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 5.25e-01 98.6% 73.6%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 53.0 6.02e-01 92.8% 98.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 5.74e-01 95.7% 90.3%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 51.0 5.44e-01 94.2% 88.1%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 5.41e-01 98.6% 94.3%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 5.30e-01 100.0% 98.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.68 55.0 5.72e-01 97.1% 93.7%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 42.0 4.47e-01 88.4% 72.1%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 5.10e-01 98.6% 92.7%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 61.0 4.85e-01 100.0% 63.8%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.65 45.0 3.78e-01 100.0% 42.9%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 48.0 5.09e-01 95.7% 98.3%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 4.72e-01 94.2% 82.9%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 4.63e-01 98.6% 78.2%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.57e-01 100.0% 80.5%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.89e-01 95.7% 94.0%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 38.0 4.40e-01 88.4% 95.9%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 39.0 3.94e-01 72.5% 80.6%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 44.0 4.49e-01 95.7% 87.9%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 46.0 4.76e-01 97.1% 93.9%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 38.0 4.14e-01 91.3% 89.3%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.55 48.0 4.49e-01 97.1% 86.0%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 49.0 3.93e-01 100.0% 63.6%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 48.0 3.80e-01 100.0% 61.9%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 35.0 3.65e-01 87.0% 75.0%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.52 46.0 3.62e-01 100.0% 61.8%
1iowA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 35.0 2.74e-01 72.5% 59.1%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024411 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 53.0 5.90e-01 95.7% 76.4%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.83 56.0 6.53e-01 98.6% 96.0%
145285 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.83 60.0 6.16e-01 100.0% 78.8%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.82 61.0 5.90e-01 100.0% 70.7%
3855038 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.81 60.0 4.46e-01 100.0% 33.8%
3855972 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.80 56.0 5.75e-01 98.6% 76.9%
5026824 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 58.0 5.84e-01 100.0% 75.7%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.79 54.0 4.84e-01 98.6% 51.6%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.79 60.0 5.58e-01 100.0% 64.7%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 58.0 6.43e-01 98.6% 96.4%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 57.0 5.91e-01 97.1% 80.0%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 60.0 5.97e-01 100.0% 78.6%
4844109 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.78 50.0 4.95e-01 94.2% 63.4%
4241924 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.77 53.0 4.85e-01 95.7% 55.6%
4271974 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.74 55.0 5.75e-01 100.0% 84.4%
1408049 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.74 54.0 4.25e-01 100.0% 39.0%
3591224 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 51.0 5.83e-01 95.7% 98.0%
4888987 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.74 53.0 5.34e-01 97.1% 75.4%
2675820 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.74 53.0 4.80e-01 97.1% 57.1%
3660964 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.73 54.0 4.77e-01 100.0% 54.0%
5022848 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 52.0 5.53e-01 94.2% 85.0%
3742938 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.73 55.0 5.72e-01 94.2% 84.6%
3597255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 51.0 4.80e-01 95.7% 60.0%
4629735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 52.0 5.39e-01 95.7% 80.0%
4300449 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.73 53.0 5.47e-01 97.1% 81.5%
3698762 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.72 53.0 4.63e-01 100.0% 52.4%
3779830 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.72 57.0 5.18e-01 100.0% 64.4%
5073368 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 54.0 5.42e-01 100.0% 80.0%
4208181 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.71 60.0 6.19e-01 98.6% 95.4%
3536595 2004.1.1.413 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tudor_2 0.64 60.0 4.77e-01 100.0% 83.1%
4616207 4.1.1.448 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5372 0.63 42.0 4.72e-01 91.3% 98.0%
4505316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.91e-01 100.0% 93.3%
3701345 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 57.0 5.39e-01 100.0% 96.2%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.62 49.0 5.04e-01 100.0% 92.3%
5079197 375.1.1.298 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_HMPTM 0.61 40.0 4.44e-01 94.2% 92.0%
3301326 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.60 51.0 3.79e-01 100.0% 42.1%
3954254 4.1.1.387 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.58 45.0 4.62e-01 100.0% 89.2%
3749834 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.58 32.0 3.48e-01 97.1% 63.6%
3991065 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.57 50.0 4.74e-01 95.7% 90.0%
6457 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.54 49.0 3.89e-01 100.0% 61.8%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.53 42.0 4.31e-01 95.7% 90.8%
4971791 10.17.1.1 ↗ beta sandwiches › jelly-roll › Acetamidase/Formamidase-like › Acetamidase/Formamidase-like › FmdA_AmdA 0.53 41.0 2.94e-01 87.0% 88.0%
3705696 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.53 36.0 2.59e-01 72.5% 80.9%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.52 44.0 4.44e-01 94.2% 98.6%
D2 medium residues 109-244
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.61 28.0 3.97e-01 87.5% 92.2%
1dt9A01 3.30.960.10 Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 0.54 24.0 2.72e-01 93.4% 51.4%
2rqpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 26.0 3.12e-01 94.1% 68.2%
1l9lA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.52 26.0 3.40e-01 89.0% 86.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4086361 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.63 31.0 3.98e-01 96.3% 82.1%
3473556 592.1.1.7 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091 0.59 28.0 3.95e-01 96.3% 91.4%
4357827 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.55 28.0 3.62e-01 96.3% 91.3%
3711521 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 28.0 3.27e-01 99.3% 68.4%