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AGM11345.1
Arc-VirKC292026__AGM11345.1__HGTV1-15__00015
Identity
- Accession:
- KC292026 ↗
- Protein ID:
- AGM11345.1 ↗
- Kingdom:
- archaea
Quality
76.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Thumleimavirales›
Halomagnusviridae›
Hagravirus›
Halogranum_tailed_virus_1
TaxID: 1273749
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-100_135-170
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qv6B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.76 | 45.0 | 4.67e-01 | 92.5% | 63.1% |
| 2b4vA03 | 3.30.70.1970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 35.0 | 3.98e-01 | 85.0% | 64.6% |
| 2rqkA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.68 | 35.0 | 3.81e-01 | 85.0% | 58.7% |
| 5ao2B02 | 3.30.70.2760 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 41.0 | 4.81e-01 | 85.0% | 91.0% |
| 2qz8A02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.66 | 33.0 | 4.09e-01 | 85.0% | 76.5% |
| 4p6qA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 35.0 | 4.49e-01 | 91.7% | 88.5% |
| 3gwmA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.65 | 39.0 | 4.01e-01 | 77.4% | 60.5% |
| 3l09A03 | 3.30.70.2670 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 24.0 | 3.81e-01 | 87.2% | 91.5% |
| 2p5vA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.64 | 33.0 | 4.01e-01 | 88.7% | 76.2% |
| 3q2wA05 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.64 | 35.0 | 3.94e-01 | 96.2% | 69.0% |
| 2mkyA00 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.63 | 29.0 | 4.06e-01 | 82.0% | 94.8% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.63 | 30.0 | 3.92e-01 | 85.0% | 83.1% |
| 2yvsA02 | 3.30.70.2560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 27.0 | 3.70e-01 | 82.0% | 84.7% |
| 4pcqA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.62 | 32.0 | 3.84e-01 | 85.0% | 75.0% |
| 2pd1A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 37.0 | 4.19e-01 | 88.7% | 80.0% |
| 4e9jA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.62 | 32.0 | 4.10e-01 | 85.0% | 92.8% |
| 5xukA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.61 | 35.0 | 3.73e-01 | 76.7% | 63.5% |
| 2ja9A02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.60 | 33.0 | 3.91e-01 | 88.0% | 81.0% |
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 31.0 | 3.77e-01 | 88.7% | 78.8% |
| 3vn5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.59 | 32.0 | 4.17e-01 | 86.5% | 100.0% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.58 | 32.0 | 4.15e-01 | 88.7% | 100.0% |
| 1vw4F02 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.57 | 31.0 | 3.65e-01 | 87.2% | 75.0% |
| 3r8yA01 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.56 | 23.0 | 3.07e-01 | 91.0% | 69.7% |
| 1yirA00 | 3.20.140.10 | Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase | 0.56 | 41.0 | 2.98e-01 | 92.5% | 26.4% |
| 2nn6G03 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.56 | 30.0 | 3.51e-01 | 92.5% | 75.0% |
| 2im5A00 | 3.20.140.10 | Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase | 0.55 | 42.0 | 3.03e-01 | 92.5% | 27.2% |
| 1ah1A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 35.0 | 3.61e-01 | 95.5% | 65.9% |
| 2r6fA06 | 1.20.1580.10 | Mainly Alpha › Up-down Bundle › ABC transporter ATPase like fold › ABC transporter ATPase like domain | 0.54 | 38.0 | 3.82e-01 | 72.2% | 99.3% |
| 5jldA01 | 3.30.1360.70 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Arginyl tRNA synthetase N-terminal domain | 0.54 | 41.0 | 4.39e-01 | 79.7% | 93.0% |
| 4mhcA01 | 1.20.58.1780 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 40.0 | 3.29e-01 | 76.7% | 43.7% |
| 3zuxA00 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.53 | 46.0 | 3.49e-01 | 94.0% | 68.2% |
| 1aorA02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.51 | 38.0 | 3.49e-01 | 78.2% | 75.8% |
| 2b0lC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 27.0 | 3.12e-01 | 85.7% | 71.3% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4971836 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.73 | 40.0 | 4.38e-01 | 88.7% | 64.5% |
| 3448756 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.68 | 37.0 | 4.33e-01 | 91.7% | 75.6% |
| 4969119 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.67 | 30.0 | 4.07e-01 | 84.2% | 83.1% |
| 3885544 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.65 | 31.0 | 4.32e-01 | 82.7% | 98.3% |
| 3391104 | 327.11.2.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 | 0.63 | 33.0 | 4.18e-01 | 87.2% | 86.7% |
| 4968960 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.63 | 45.0 | 3.80e-01 | 91.0% | 43.5% |
| 4024870 | 327.11.2.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 | 0.58 | 31.0 | 3.72e-01 | 90.2% | 81.2% |
| 5056502 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.57 | 43.0 | 2.97e-01 | 77.4% | 56.4% |
| 5063729 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.56 | 45.0 | 3.97e-01 | 98.5% | 59.5% |
| 4291242 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.56 | 42.0 | 3.21e-01 | 80.5% | 85.5% |
| 3459328 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.52 | 32.0 | 3.71e-01 | 75.2% | 85.3% |
| 3608730 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.51 | 43.0 | 3.29e-01 | 93.2% | 58.2% |
| 3722153 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.50 | 41.0 | 3.08e-01 | 87.2% | 58.2% |
| 3289514 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.50 | 41.0 | 3.29e-01 | 88.0% | 84.4% |
| 4252702 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.50 | 40.0 | 3.13e-01 | 86.5% | 59.3% |
| 3172514 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.50 | 40.0 | 3.05e-01 | 86.5% | 58.8% |