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AGM11354.1

Arc-Vir

KC292026__AGM11354.1__HGTV1-24__00024

Identity

Accession:
KC292026 ↗
Protein ID:
AGM11354.1 ↗
Kingdom:
archaea

Quality

86.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-95
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.83 72.0 6.76e-01 100.0% 78.6%
4uhvA04 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.82 76.0 6.66e-01 100.0% 78.6%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 39.0 4.25e-01 100.0% 57.6%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 38.0 4.13e-01 100.0% 57.4%
2qgqA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 54.0 5.81e-01 98.6% 95.0%
3go5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 55.0 5.66e-01 98.6% 85.7%
3pqiA01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.70 62.0 5.99e-01 98.6% 96.3%
2p5zX04 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.69 56.0 5.90e-01 100.0% 96.9%
2vqeL00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 64.0 5.23e-01 100.0% 60.5%
2ja9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 62.0 5.94e-01 100.0% 94.0%
3k0xA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 52.0 4.71e-01 100.0% 60.6%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 54.0 5.25e-01 98.6% 79.7%
1yezA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 45.0 4.66e-01 100.0% 76.5%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.65 60.0 5.63e-01 100.0% 87.2%
1pybA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 57.0 5.00e-01 100.0% 76.6%
1g2bA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 37.0 3.94e-01 100.0% 66.1%
1ewiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 55.0 4.81e-01 100.0% 71.9%
2c35B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 58.0 5.34e-01 100.0% 94.5%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 35.0 3.67e-01 100.0% 59.4%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 57.0 4.89e-01 100.0% 74.8%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 56.0 5.09e-01 100.0% 88.9%
1uwvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 44.0 4.44e-01 100.0% 74.0%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 36.0 4.03e-01 100.0% 74.5%
3s24A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 49.0 4.53e-01 100.0% 67.0%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 35.0 3.80e-01 100.0% 65.6%
4pqxA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.62 53.0 5.31e-01 100.0% 94.5%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.62 50.0 5.02e-01 100.0% 90.5%
2eqsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 52.0 4.93e-01 100.0% 83.1%
4jbjA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 53.0 4.62e-01 100.0% 67.3%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 53.0 4.81e-01 100.0% 79.2%
5a0dB01 2.30.30.670 Mainly Beta › Roll › SH3 type barrels. › Thioester domain 0.59 50.0 4.57e-01 100.0% 87.0%
2vnuD02 2.40.50.700 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 49.0 4.83e-01 100.0% 89.6%
4mtnA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 44.0 4.57e-01 97.2% 98.4%
4c3iG02 2.40.50.1060 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 45.0 3.70e-01 100.0% 58.3%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5058911 2.7.1.0 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N 0.92 87.0 7.33e-01 100.0% 70.9%
4957569 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.88 82.0 7.37e-01 100.0% 75.8%
3946740 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.85 73.0 6.72e-01 100.0% 73.3%
5003246 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.85 80.0 6.07e-01 100.0% 48.7%
None 0.83 79.0 7.05e-01 100.0% 85.3%
None 0.83 78.0 5.18e-01 100.0% 32.0%
1731165 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.83 71.0 6.55e-01 100.0% 74.2%
3970551 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.82 77.0 5.58e-01 100.0% 45.0%
4413978 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.82 77.0 5.07e-01 100.0% 31.2%
3967453 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.82 77.0 6.91e-01 100.0% 85.3%
3970828 2.7.1.0 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N 0.82 77.0 5.43e-01 100.0% 41.5%
3971883 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.82 76.0 4.69e-01 100.0% 21.9%
4995814 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.81 75.0 5.68e-01 100.0% 49.4%
3943688 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.81 76.0 5.48e-01 100.0% 46.1%
3970340 2.7.1.4 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › DUF6484 0.81 65.0 5.24e-01 100.0% 47.3%
2468517 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.79 73.0 5.33e-01 100.0% 41.6%
3467905 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 54.0 6.07e-01 79.2% 98.2%
4052370 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 57.0 6.03e-01 100.0% 90.8%
4654307 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.74 63.0 6.39e-01 100.0% 92.9%
4956851 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 53.0 5.56e-01 97.2% 83.1%
4131641 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.73 53.0 5.78e-01 98.6% 93.1%
4677730 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.73 56.0 5.89e-01 100.0% 92.2%
5006052 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 51.0 5.41e-01 98.6% 82.8%
1406655 2.1.1.65 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB_2 0.72 67.0 6.41e-01 100.0% 91.4%
4083610 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.72 57.0 5.98e-01 98.6% 93.8%
5072874 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 52.0 5.47e-01 98.6% 84.6%
5039371 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.72 51.0 5.49e-01 98.6% 88.3%
4943419 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 51.0 5.48e-01 100.0% 88.3%
4931163 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.72 51.0 5.52e-01 100.0% 90.0%
4957842 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.71 51.0 5.52e-01 100.0% 90.0%
4952526 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.71 54.0 5.02e-01 98.6% 64.4%
4956338 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 50.0 5.40e-01 100.0% 88.3%
3386087 2.1.1.65 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB_2 0.71 65.0 6.26e-01 100.0% 92.5%
4112980 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.70 56.0 5.73e-01 100.0% 88.6%
5001920 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.69 50.0 5.18e-01 100.0% 80.9%
3244962 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 55.0 5.51e-01 98.6% 82.7%
3840089 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 62.0 5.83e-01 100.0% 82.4%
4929508 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 63.0 5.18e-01 100.0% 62.4%
4012257 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 64.0 5.37e-01 100.0% 65.8%
4232512 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.68 58.0 5.55e-01 98.6% 80.7%
5049808 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.67 60.0 5.47e-01 98.6% 84.0%
4018598 2.1.1.219 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_cyt-4 0.67 57.0 5.51e-01 98.6% 83.7%
4230617 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.66 56.0 5.59e-01 100.0% 90.5%
3876051 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.66 59.0 5.62e-01 100.0% 88.2%
4077955 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.66 55.0 5.58e-01 100.0% 94.3%
3702421 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 58.0 5.02e-01 98.6% 68.2%
3593900 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 57.0 5.42e-01 97.2% 87.1%
4287649 2.1.1.104 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CvfB_1st 0.65 51.0 5.22e-01 98.6% 88.6%
3497958 2.1.1.69 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI2 0.65 58.0 4.51e-01 100.0% 54.8%
3491307 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 51.0 4.13e-01 86.1% 95.7%
None 0.64 58.0 3.71e-01 100.0% 24.7%
3511673 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 54.0 3.60e-01 98.6% 23.1%
4234563 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 57.0 5.57e-01 100.0% 92.3%
4321476 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 56.0 5.31e-01 100.0% 82.4%
4938589 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 55.0 4.55e-01 100.0% 74.8%
4630654 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 54.0 5.37e-01 100.0% 89.3%
4552741 3223.1.1.1 beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC 0.63 50.0 2.98e-01 100.0% 11.4%
3214896 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 52.0 4.55e-01 100.0% 60.9%
3895927 325.1.6.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif 0.62 43.0 3.53e-01 100.0% 38.5%
3590786 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 56.0 4.83e-01 100.0% 70.0%
3241025 2.1.1.117 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DPOA2_OB 0.62 55.0 4.56e-01 100.0% 56.8%
3713587 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 55.0 4.94e-01 100.0% 80.0%
4238204 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 54.0 4.82e-01 100.0% 72.4%
3703743 2.1.1.135 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.61 54.0 5.21e-01 97.2% 92.5%
1558558 2.22.1.0 beta barrels › OB-fold › Pilus-presented adhesin barrel insertion domain › Pilus-presented adhesin barrel insertion domain 0.61 46.0 4.76e-01 84.7% 92.6%
3261698 2.1.1.137 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF6748 0.60 54.0 5.01e-01 100.0% 87.8%
3481313 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 47.0 3.88e-01 100.0% 48.1%
3947431 3454.1.1.2 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC 0.53 36.0 3.81e-01 72.2% 100.0%
D2 medium residues 111-163
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.70 58.0 4.31e-01 94.3% 55.4%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.61 51.0 4.19e-01 100.0% 49.5%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 54.0 3.92e-01 98.1% 44.2%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.59 44.0 3.63e-01 83.0% 83.3%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.59 47.0 3.62e-01 100.0% 95.3%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.58 46.0 3.37e-01 86.8% 34.3%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 41.0 2.59e-01 75.5% 15.9%
1lf6A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 48.0 3.12e-01 100.0% 55.7%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 47.0 3.42e-01 92.5% 70.6%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 44.0 2.91e-01 86.8% 90.2%
7ahfA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 47.0 3.50e-01 96.2% 86.3%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 43.0 2.88e-01 86.8% 90.4%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.56 44.0 3.53e-01 88.7% 42.0%
2zfdB00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.56 42.0 3.31e-01 83.0% 37.9%
3dmbA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 44.0 3.27e-01 88.7% 78.1%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.55 41.0 3.05e-01 88.7% 63.3%
7bysA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 45.0 2.86e-01 96.2% 28.8%
2q1fA04 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.54 47.0 3.46e-01 100.0% 93.1%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.53 41.0 2.90e-01 86.8% 27.3%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.28e-01 81.1% 52.6%
1attA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 43.0 3.36e-01 100.0% 73.6%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 38.0 3.30e-01 77.4% 75.6%
2f4wB00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 44.0 3.30e-01 100.0% 40.1%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 41.0 2.76e-01 86.8% 89.9%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 40.0 2.68e-01 86.8% 89.5%
3gdoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 44.0 3.08e-01 100.0% 70.4%
5mw8A01 3.30.200.110 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Inositol-pentakisphosphate 2-kinase, N-lobe 0.52 36.0 2.92e-01 75.5% 88.6%
4aqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 36.0 3.06e-01 75.5% 83.3%
3we5A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 41.0 3.24e-01 100.0% 81.6%
2rl8A00 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.51 41.0 3.15e-01 98.1% 44.6%
1nnvA01 3.10.450.140 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative 0.51 42.0 3.55e-01 100.0% 98.0%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.51 43.0 3.05e-01 100.0% 42.9%
4oebA00 2.60.270.50 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.50 43.0 3.28e-01 100.0% 73.3%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.50 44.0 3.27e-01 100.0% 42.1%
1w18A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 39.0 2.39e-01 100.0% 38.6%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 40.0 2.48e-01 92.5% 35.7%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3357481 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.64 56.0 3.20e-01 100.0% 28.0%
3171838 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.61 48.0 2.82e-01 88.7% 10.2%
4480962 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.61 54.0 3.34e-01 100.0% 29.7%
3474310 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.61 41.0 3.29e-01 77.4% 34.5%
4975626 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.60 52.0 3.84e-01 100.0% 41.3%
3464481 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.59 40.0 2.40e-01 79.2% 9.9%
3218289 4096.1.1.1 a+b two layers › NAP-like › NAP-like › NAP-like › NAP 0.59 50.0 3.32e-01 100.0% 40.0%
1318713 3894.1.1.2 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfA_EBD 0.59 48.0 3.65e-01 100.0% 38.1%
4506576 7026.1.1.5 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.58 48.0 3.03e-01 100.0% 37.8%
3719371 101.1.12.0 alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.57 40.0 3.15e-01 75.5% 90.4%
3741054 10.1.1.3 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Calreticulin 0.57 49.0 3.13e-01 100.0% 26.8%
4003099 4096.1.1.1 a+b two layers › NAP-like › NAP-like › NAP-like › NAP 0.57 49.0 3.33e-01 100.0% 46.8%
5024957 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.56 40.0 3.62e-01 81.1% 64.6%
3460207 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 36.0 2.34e-01 79.2% 12.6%
4507204 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.55 46.0 3.42e-01 100.0% 38.7%
4235928 9.16.1.3 beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 › APCDDC 0.55 44.0 3.24e-01 100.0% 60.0%
4021944 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.55 42.0 2.80e-01 90.6% 19.2%
3697024 7026.1.1.5 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD 0.54 45.0 2.64e-01 100.0% 25.3%
4202676 5.1.3.20 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.54 45.0 2.92e-01 100.0% 25.7%
3721529 298.1.1.22 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Gal80p_C-like 0.54 44.0 3.38e-01 98.1% 95.0%
3829563 897.1.1.0 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.54 46.0 3.32e-01 100.0% 34.5%
3279798 2002.1.1.228 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_129 0.53 45.0 2.70e-01 98.1% 13.4%
3991567 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.53 43.0 2.64e-01 100.0% 17.8%
3233978 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 42.0 2.65e-01 94.3% 16.0%
3956123 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.52 43.0 3.29e-01 100.0% 50.7%
4984221 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.52 44.0 3.25e-01 96.2% 55.9%
3632937 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.51 35.0 2.72e-01 71.7% 31.7%
3405401 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.51 41.0 2.50e-01 100.0% 17.3%
3362134 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 41.0 2.54e-01 90.6% 90.8%
3783690 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.50 37.0 2.16e-01 81.1% 30.4%
D3 medium residues 178-210
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 42.0 3.70e-01 78.8% 43.9%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 3.42e-01 72.7% 38.7%
2pn0A02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.60 49.0 3.72e-01 97.0% 81.7%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.59 41.0 3.73e-01 72.7% 56.0%
4griA02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.59 49.0 3.35e-01 97.0% 63.4%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 40.0 2.85e-01 81.8% 24.1%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 42.0 3.63e-01 78.8% 45.6%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.57 39.0 2.98e-01 72.7% 75.6%
1l5xA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.57 44.0 2.71e-01 100.0% 84.4%
6b1zA02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.56 47.0 3.16e-01 97.0% 65.9%
2pytA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 45.0 3.17e-01 100.0% 53.9%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.06e-01 78.8% 35.6%
2b3yA05 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.54 41.0 2.55e-01 97.0% 88.1%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 40.0 2.32e-01 97.0% 37.6%
1a2vA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.54 40.0 2.31e-01 100.0% 21.4%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 40.0 2.58e-01 93.9% 66.7%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.52 40.0 2.89e-01 97.0% 27.0%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 2.67e-01 75.8% 26.0%
5h4eA01 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.51 39.0 2.52e-01 100.0% 65.8%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 36.0 2.95e-01 100.0% 36.7%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3643123 3676.1.1.0 alpha duplicates or obligate multimers › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain 0.67 49.0 2.83e-01 84.8% 85.8%
3873763 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.67 46.0 4.39e-01 72.7% 60.0%
5004414 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.65 49.0 3.60e-01 100.0% 30.4%
4050627 513.1.1.1 a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 0.61 40.0 3.07e-01 90.9% 26.2%
5034142 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 47.0 2.73e-01 100.0% 33.3%
2528573 8002.1.1.1 alpha bundles › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › tRNA-synt_1c 0.58 49.0 3.54e-01 97.0% 80.6%
3502668 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 38.0 3.13e-01 72.7% 38.5%
3418484 2484.1.1.26 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.55 40.0 2.35e-01 100.0% 8.4%
2168114 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.54 37.0 3.40e-01 75.8% 48.1%
4027119 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.54 37.0 2.55e-01 75.8% 42.2%
3949685 2004.1.1.474 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N, MMR_HSR1 0.54 37.0 2.42e-01 72.7% 17.2%
4958666 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.50 34.0 2.60e-01 72.7% 26.7%