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AGM11355.1
Arc-VirKC292026__AGM11355.1__HGTV1-25__00025
Identity
- Accession:
- KC292026 ↗
- Protein ID:
- AGM11355.1 ↗
- Kingdom:
- archaea
Quality
83.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Thumleimavirales›
Halomagnusviridae›
Hagravirus›
Halogranum_tailed_virus_1
TaxID: 1273749
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-124
Domain cluster:
rep: IMGVR_UViG_7000000193_000218-7000000193-C1910322__gene_186168__D7-102
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r1kB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.73 | 51.0 | 4.44e-01 | 71.4% | 73.5% |
| 3jvaA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.68 | 42.0 | 3.92e-01 | 72.5% | 50.0% |
| 3a76A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 47.0 | 4.15e-01 | 75.8% | 74.8% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 32.0 | 3.56e-01 | 97.8% | 57.3% |
| 3ik4B01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.65 | 40.0 | 3.70e-01 | 72.5% | 48.3% |
| 2chrA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.64 | 40.0 | 3.61e-01 | 72.5% | 45.7% |
| 3c1aA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.64 | 49.0 | 4.26e-01 | 98.9% | 52.4% |
| 2i52B00 | 3.30.1300.20 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) | 0.64 | 56.0 | 5.20e-01 | 100.0% | 77.6% |
| 1tkkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.64 | 40.0 | 3.70e-01 | 73.6% | 50.4% |
| 3hrdC02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.63 | 44.0 | 4.09e-01 | 72.5% | 62.8% |
| 3ugvA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.62 | 42.0 | 3.76e-01 | 73.6% | 50.0% |
| 4r60A02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.62 | 55.0 | 4.11e-01 | 100.0% | 38.7% |
| 3px5A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.62 | 39.0 | 3.60e-01 | 73.6% | 50.0% |
| 4o3vA00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.61 | 44.0 | 3.85e-01 | 75.8% | 71.7% |
| 2zadA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.61 | 37.0 | 3.49e-01 | 73.6% | 49.1% |
| 3ripA02 | 1.20.120.1900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain | 0.60 | 55.0 | 3.85e-01 | 100.0% | 36.2% |
| 4ii2A02 | 3.40.50.12550 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2 | 0.60 | 44.0 | 3.35e-01 | 76.9% | 65.0% |
| 3ebyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 42.0 | 3.62e-01 | 75.8% | 75.8% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.59 | 43.0 | 4.02e-01 | 75.8% | 91.9% |
| 3bjsA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.59 | 41.0 | 3.77e-01 | 73.6% | 55.6% |
| 6hbzA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.58 | 44.0 | 3.68e-01 | 80.2% | 64.8% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 39.0 | 4.11e-01 | 81.3% | 77.1% |
| 4ae7A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 44.0 | 3.49e-01 | 82.4% | 56.5% |
| 3fsdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 41.0 | 3.81e-01 | 76.9% | 80.2% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.57 | 44.0 | 4.31e-01 | 82.4% | 94.9% |
| 2gdqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 35.0 | 3.38e-01 | 71.4% | 52.3% |
| 3d6xB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 42.0 | 3.63e-01 | 78.0% | 81.4% |
| 2pgwA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 40.0 | 3.45e-01 | 75.8% | 52.7% |
| 3rgaA02 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 40.0 | 3.47e-01 | 76.9% | 79.7% |
| 3exzB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 45.0 | 3.87e-01 | 90.1% | 92.5% |
| 3qldA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 37.0 | 3.16e-01 | 72.5% | 42.1% |
| 2yh9B00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.55 | 29.0 | 3.30e-01 | 78.0% | 66.2% |
| 2qddA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 34.0 | 3.11e-01 | 71.4% | 44.6% |
| 1eerC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 34.0 | 3.43e-01 | 86.8% | 59.8% |
| 2e87A01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.54 | 46.0 | 3.84e-01 | 94.5% | 80.0% |
| 3e1eC00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 43.0 | 3.74e-01 | 87.9% | 100.0% |
| 1t82A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 43.0 | 3.76e-01 | 90.1% | 64.8% |
| 3q45A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 36.0 | 3.20e-01 | 100.0% | 50.8% |
| 4ffuB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 42.0 | 3.63e-01 | 90.1% | 92.7% |
| 3s79A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 46.0 | 2.97e-01 | 100.0% | 65.7% |
| 1lxmA04 | 2.60.40.1380 | Mainly Beta › Sandwich › Immunoglobulin-like › E set domains; domain 4 | 0.51 | 33.0 | 3.52e-01 | 89.0% | 78.9% |
| 2pmqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 34.0 | 3.10e-01 | 70.3% | 49.6% |
| 8dajA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 41.0 | 2.91e-01 | 90.1% | 40.6% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5062717 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.77 | 71.0 | 6.55e-01 | 100.0% | 86.1% |
| 1389718 | 243.1.1.32 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5104 | 0.73 | 51.0 | 4.44e-01 | 71.4% | 73.5% |
| 4426344 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.70 | 48.0 | 5.40e-01 | 76.9% | 94.1% |
| 3711534 | 864.1.1.2 ↗ | a+b two layers › DLC › DLC › DLC › Tctex-1 | 0.69 | 57.0 | 5.31e-01 | 89.0% | 90.4% |
| 3947887 | 283.2.1.9 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Sheath_initiator | 0.69 | 62.0 | 5.75e-01 | 100.0% | 78.3% |
| 1518918 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.69 | 57.0 | 5.30e-01 | 89.0% | 72.3% |
| 3804346 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 47.0 | 5.28e-01 | 100.0% | 92.9% |
| 3914513 | 181.1.1.6 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › PCM1_C | 0.68 | 57.0 | 5.27e-01 | 91.2% | 93.9% |
| 4017137 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.68 | 48.0 | 3.42e-01 | 74.7% | 29.3% |
| 3501219 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.68 | 59.0 | 5.65e-01 | 94.5% | 96.2% |
| 1148184 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.67 | 60.0 | 5.66e-01 | 100.0% | 83.3% |
| 3958465 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.67 | 48.0 | 4.07e-01 | 75.8% | 70.7% |
| 4961187 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.66 | 57.0 | 5.23e-01 | 100.0% | 92.0% |
| 3980756 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.66 | 54.0 | 5.16e-01 | 89.0% | 81.9% |
| 4958928 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.66 | 45.0 | 4.20e-01 | 71.4% | 90.4% |
| 4580730 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.66 | 42.0 | 5.00e-01 | 72.5% | 100.0% |
| 3587653 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.65 | 46.0 | 4.24e-01 | 74.7% | 77.5% |
| 4266048 | 283.1.1.3 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase | 0.63 | 57.0 | 5.45e-01 | 100.0% | 96.2% |
| 5840 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.63 | 34.0 | 3.06e-01 | 87.9% | 36.8% |
| 3747438 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.62 | 56.0 | 3.34e-01 | 100.0% | 19.1% |
| 3396511 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.60 | 41.0 | 4.10e-01 | 100.0% | 67.4% |
| 3288890 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.60 | 44.0 | 3.92e-01 | 76.9% | 76.2% |
| 4966665 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.60 | 53.0 | 3.95e-01 | 100.0% | 39.1% |
| 5037476 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.60 | 52.0 | 3.95e-01 | 100.0% | 39.6% |
| 3788419 | 523.1.1.0 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain | 0.59 | 47.0 | 4.87e-01 | 100.0% | 91.8% |
| 5057638 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.59 | 52.0 | 4.39e-01 | 97.8% | 84.7% |
| 1242000 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.58 | 41.0 | 3.65e-01 | 73.6% | 51.2% |
| 3659812 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.58 | 34.0 | 3.47e-01 | 96.7% | 57.8% |
| 4960252 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.58 | 45.0 | 4.08e-01 | 81.3% | 87.4% |
| 3201882 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 48.0 | 3.58e-01 | 94.5% | 100.0% |
| 5000178 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.56 | 33.0 | 2.98e-01 | 73.6% | 40.8% |
| 4999035 | 873.1.1.13 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › ATC_hydrolase | 0.56 | 43.0 | 3.50e-01 | 83.5% | 81.0% |
| 4969784 | 3425.2.1.0 ↗ | a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain | 0.55 | 48.0 | 3.56e-01 | 100.0% | 57.4% |
| 4063162 | 222.1.1.5 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FabA | 0.55 | 41.0 | 3.51e-01 | 79.1% | 76.7% |
| 4428089 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.55 | 48.0 | 3.08e-01 | 100.0% | 62.2% |
| 3413182 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.55 | 49.0 | 3.05e-01 | 100.0% | 61.6% |
| 3728958 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.55 | 49.0 | 3.08e-01 | 100.0% | 68.2% |
| 3487231 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.54 | 38.0 | 3.10e-01 | 73.6% | 85.6% |
| 3651800 | 71.1.1.12 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 | 0.53 | 39.0 | 3.41e-01 | 78.0% | 55.9% |
| 4847872 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.53 | 41.0 | 3.81e-01 | 83.5% | 68.1% |
| 4410498 | 222.1.1.10 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 | 0.53 | 43.0 | 3.85e-01 | 100.0% | 62.2% |
| 4858755 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.53 | 41.0 | 3.39e-01 | 83.5% | 91.5% |
| 2717412 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 36.0 | 4.02e-01 | 73.6% | 94.2% |
| 3460760 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.52 | 38.0 | 3.23e-01 | 78.0% | 65.8% |
| 4012857 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 30.0 | 3.34e-01 | 100.0% | 72.9% |
| 3962059 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.51 | 37.0 | 2.62e-01 | 76.9% | 89.0% |
| 3990002 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.51 | 34.0 | 3.55e-01 | 100.0% | 74.1% |
| 3746917 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.51 | 29.0 | 3.27e-01 | 82.4% | 76.9% |