←Back to structures
AGM11371.1
Arc-VirKC292026__AGM11371.1__HGTV1-41__00041
Identity
- Accession:
- KC292026 ↗
- Protein ID:
- AGM11371.1 ↗
- Kingdom:
- archaea
Quality
95.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Thumleimavirales›
Halomagnusviridae›
Hagravirus›
Halogranum_tailed_virus_1
TaxID: 1273749
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-129
Domain cluster:
rep: MG543995.1__ATW69300.1__CJF57_00137__00137__D14-117
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00988.29 best | CPSase_sm_chain | 117.5 | 4.60e-34 | 90.6% | 99.2% |
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a9xB01 | 3.50.30.20 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Carbamoyl-phosphate synthase small subunit, N-terminal domain | 0.97 | 95.0 | 8.88e-01 | 100.0% | 94.7% |
| 5fbtA03 | 3.50.30.10 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Phosphohistidine domain | 0.76 | 58.0 | 6.52e-01 | 93.0% | 100.0% |
| 2hi6A00 | 3.50.30.10 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Phosphohistidine domain | 0.75 | 67.0 | 6.70e-01 | 94.5% | 99.2% |
| 3h5eA00 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.75 | 61.0 | 5.74e-01 | 85.9% | 93.5% |
| 3iibA02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.73 | 64.0 | 6.09e-01 | 93.8% | 98.7% |
| 4tjvA00 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.71 | 63.0 | 5.78e-01 | 96.1% | 94.5% |
| 2hcuA00 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.70 | 58.0 | 5.19e-01 | 88.3% | 86.4% |
| 3icuA01 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.69 | 61.0 | 5.61e-01 | 94.5% | 94.4% |
| 5ib9A02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.69 | 60.0 | 6.06e-01 | 93.8% | 96.9% |
| 1v7lA01 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.68 | 56.0 | 5.18e-01 | 85.9% | 83.4% |
| 6okdA02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.68 | 59.0 | 5.37e-01 | 93.0% | 98.8% |
| 1q5xA00 | 3.50.30.40 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like | 0.67 | 61.0 | 5.71e-01 | 100.0% | 97.5% |
| 2pcnA00 | 3.50.30.40 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like | 0.67 | 61.0 | 5.69e-01 | 100.0% | 96.3% |
| 4e5sA02 | 3.50.30.60 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like | 0.67 | 60.0 | 5.42e-01 | 96.9% | 98.8% |
| 5ze4A01 | 3.50.30.80 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › IlvD/EDD C-terminal domain-like | 0.66 | 60.0 | 5.44e-01 | 100.0% | 77.0% |
| 1ggoA03 | 3.50.30.10 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Phosphohistidine domain | 0.65 | 57.0 | 5.87e-01 | 98.4% | 97.6% |
| 3wsfA02 | 3.40.1390.30 | Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › NIF3 (NGG1p interacting factor 3)-like | 0.65 | 39.0 | 4.13e-01 | 77.3% | 65.8% |
| 1nbwA03 | 3.50.30.70 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Swiveling domain of dehydratase reactivase alpha subunit | 0.64 | 57.0 | 5.36e-01 | 96.1% | 80.5% |
| 1g8mA03 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.64 | 47.0 | 4.49e-01 | 75.8% | 100.0% |
| 4ehiA02 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.63 | 50.0 | 4.70e-01 | 85.2% | 96.2% |
| 1a6dA03 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.61 | 55.0 | 5.18e-01 | 96.9% | 97.4% |
| 2fywA02 | 3.40.1390.30 | Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › NIF3 (NGG1p interacting factor 3)-like | 0.59 | 37.0 | 3.79e-01 | 77.3% | 63.2% |
| 4d8qF03 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.59 | 54.0 | 4.94e-01 | 97.7% | 98.1% |
| 6ks6E03 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.59 | 53.0 | 4.94e-01 | 97.7% | 97.5% |
| 6ks6g03 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.59 | 53.0 | 5.00e-01 | 97.7% | 96.7% |
| 6xh5B01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 44.0 | 3.85e-01 | 88.3% | 97.0% |
| 5d6nA00 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.54 | 46.0 | 3.18e-01 | 96.1% | 81.9% |
| 1xdpA04 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.52 | 39.0 | 3.50e-01 | 78.1% | 88.6% |
| 2yybA02 | 3.40.1390.30 | Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › NIF3 (NGG1p interacting factor 3)-like | 0.52 | 39.0 | 4.06e-01 | 76.6% | 84.6% |
| 1q14A01 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.52 | 41.0 | 3.72e-01 | 86.7% | 85.5% |
| 2rirE01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 46.0 | 4.37e-01 | 96.9% | 99.3% |
| 5nusA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.52 | 43.0 | 3.67e-01 | 90.6% | 84.4% |
| 6p0wA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 44.0 | 4.35e-01 | 97.7% | 89.6% |
| 2ocdA02 | 3.40.50.40 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 43.0 | 4.37e-01 | 94.5% | 95.2% |
| 2y8kA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 43.0 | 3.38e-01 | 97.7% | 91.0% |
| 4eo3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 40.0 | 3.99e-01 | 96.9% | 81.2% |
ECOD (72)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4941557 | 2487.1.1.5 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › CPSase_sm_chain | 0.97 | 95.0 | 8.73e-01 | 100.0% | 92.9% |
| 4133464 | 2487.1.1.5 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › CPSase_sm_chain | 0.97 | 94.0 | 8.94e-01 | 100.0% | 94.5% |
| 4666961 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.96 | 94.0 | 8.52e-01 | 100.0% | 94.4% |
| 4977372 | 2487.1.1.5 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › CPSase_sm_chain | 0.96 | 94.0 | 8.29e-01 | 100.0% | 92.9% |
| 3385787 | 2487.1.1.5 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › CPSase_sm_chain | 0.96 | 93.0 | 8.81e-01 | 100.0% | 97.2% |
| 4015609 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.95 | 93.0 | 8.54e-01 | 100.0% | 96.8% |
| 4199186 | 2487.1.1.5 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › CPSase_sm_chain | 0.95 | 92.0 | 8.65e-01 | 100.0% | 94.7% |
| 3788454 | 2487.1.1.5 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › CPSase_sm_chain | 0.95 | 93.0 | 7.85e-01 | 100.0% | 90.5% |
| 4193740 | 2487.1.1.5 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › CPSase_sm_chain | 0.95 | 92.0 | 8.39e-01 | 100.0% | 92.5% |
| 4012708 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.95 | 92.0 | 7.98e-01 | 100.0% | 97.8% |
| 3507014 | 2487.1.1.5 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › CPSase_sm_chain | 0.95 | 92.0 | 8.50e-01 | 100.0% | 96.1% |
| 4947294 | 2487.1.1.5 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › CPSase_sm_chain | 0.95 | 92.0 | 8.27e-01 | 100.0% | 95.2% |
| 4136205 | 2487.1.1.5 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › CPSase_sm_chain | 0.94 | 91.0 | 8.43e-01 | 100.0% | 95.5% |
| 4943560 | 2487.1.1.6 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › AcnX_swivel_put | 0.75 | 64.0 | 6.37e-01 | 89.1% | 96.9% |
| 3643102 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.75 | 67.0 | 6.48e-01 | 94.5% | 95.7% |
| 5043771 | 2487.1.1.6 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › AcnX_swivel_put | 0.74 | 65.0 | 6.52e-01 | 93.0% | 99.2% |
| 4996600 | 2487.1.1.6 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › AcnX_swivel_put | 0.74 | 66.0 | 6.63e-01 | 94.5% | 100.0% |
| 4082403 | 2487.1.1.6 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › AcnX_swivel_put | 0.74 | 68.0 | 6.56e-01 | 96.9% | 96.4% |
| 5079536 | 2487.1.1.6 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › AcnX_swivel_put | 0.74 | 66.0 | 6.53e-01 | 95.3% | 98.5% |
| 5059071 | 2487.1.1.6 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › AcnX_swivel_put | 0.74 | 66.0 | 6.47e-01 | 94.5% | 100.0% |
| 5081170 | 2487.1.1.6 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › AcnX_swivel_put | 0.74 | 66.0 | 6.65e-01 | 94.5% | 100.0% |
| None | — | 0.73 | 60.0 | 5.16e-01 | 85.9% | 76.9% | |
| 5023432 | 2493.1.1.0 ↗ | a/b three-layered sandwiches › MurF and HprK N-domain-like › MurF and HprK N-domain-like › MurF and HprK N-domain-like | 0.73 | 48.0 | 5.63e-01 | 80.5% | 94.4% |
| 3427896 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.73 | 64.0 | 6.16e-01 | 93.8% | 95.2% |
| 3974816 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.73 | 60.0 | 5.10e-01 | 87.5% | 78.5% |
| 4978306 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.72 | 63.0 | 6.14e-01 | 93.8% | 93.6% |
| 3445359 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.72 | 63.0 | 6.34e-01 | 94.5% | 93.8% |
| 4424156 | 2487.1.1.3 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C | 0.71 | 59.0 | 4.89e-01 | 87.5% | 69.1% |
| 3719605 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.71 | 64.0 | 6.38e-01 | 95.3% | 98.5% |
| 3206858 | 2487.1.1.3 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C | 0.71 | 59.0 | 4.95e-01 | 87.5% | 75.2% |
| 3820544 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.71 | 63.0 | 6.14e-01 | 94.5% | 95.0% |
| 1423665 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.71 | 63.0 | 5.78e-01 | 96.1% | 94.5% |
| 2978873 | 2493.1.1.0 ↗ | a/b three-layered sandwiches › MurF and HprK N-domain-like › MurF and HprK N-domain-like › MurF and HprK N-domain-like | 0.70 | 51.0 | 5.48e-01 | 89.1% | 89.7% |
| 3610127 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.70 | 63.0 | 6.36e-01 | 97.7% | 100.0% |
| 3441440 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.69 | 61.0 | 6.13e-01 | 93.8% | 96.9% |
| 4990338 | 2487.1.1.6 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › AcnX_swivel_put | 0.69 | 60.0 | 6.28e-01 | 93.8% | 100.0% |
| 5035215 | 2487.1.1.3 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C | 0.69 | 57.0 | 5.20e-01 | 87.5% | 78.8% |
| 3863773 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.69 | 61.0 | 5.23e-01 | 93.8% | 91.8% |
| 3182360 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.69 | 60.0 | 5.91e-01 | 93.8% | 94.8% |
| 4981229 | 2487.1.1.3 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C | 0.68 | 56.0 | 5.07e-01 | 87.5% | 81.7% |
| 3979250 | 2487.1.1.2 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PEP-utilizers | 0.68 | 64.0 | 6.18e-01 | 100.0% | 94.3% |
| 3859304 | 2487.1.1.13 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Ncstrn_small | 0.68 | 60.0 | 4.88e-01 | 96.9% | 99.2% |
| 4253809 | 2487.1.1.8 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like | 0.68 | 61.0 | 5.59e-01 | 99.2% | 91.8% |
| 1258574 | 2487.1.1.18 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Peptidase_S66C | 0.68 | 60.0 | 5.49e-01 | 96.9% | 97.1% |
| 4593939 | 2487.1.1.8 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like | 0.67 | 61.0 | 5.70e-01 | 100.0% | 98.8% |
| 4169756 | 2487.1.1.8 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like | 0.67 | 61.0 | 5.57e-01 | 100.0% | 90.6% |
| 4499643 | 2487.1.1.8 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like | 0.67 | 61.0 | 5.70e-01 | 100.0% | 96.9% |
| 4857936 | 2487.1.1.13 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Ncstrn_small | 0.66 | 52.0 | 4.37e-01 | 82.8% | 74.1% |
| 4948821 | 7509.1.1.1 ↗ | a/b three-layered sandwiches › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › DUF34_NIF3 | 0.65 | 41.0 | 4.79e-01 | 78.1% | 87.1% |
| 5083760 | 2492.1.1.5 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas | 0.64 | 52.0 | 4.50e-01 | 85.9% | 89.0% |
| 4528709 | 2487.1.1.2 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PEP-utilizers | 0.64 | 58.0 | 5.66e-01 | 98.4% | 94.3% |
| 4972251 | 7509.1.1.1 ↗ | a/b three-layered sandwiches › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › DUF34_NIF3 | 0.64 | 39.0 | 3.99e-01 | 77.3% | 61.6% |
| 4287814 | 2492.1.1.5 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas | 0.63 | 51.0 | 4.50e-01 | 85.9% | 88.1% |
| 4110601 | 7509.1.1.1 ↗ | a/b three-layered sandwiches › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › DUF34_NIF3 | 0.62 | 38.0 | 3.95e-01 | 78.9% | 64.2% |
| 4494858 | 2493.1.1.3 ↗ | a/b three-layered sandwiches › MurF and HprK N-domain-like › MurF and HprK N-domain-like › MurF and HprK N-domain-like › LpxD | 0.61 | 47.0 | 5.06e-01 | 85.9% | 98.1% |
| 3910615 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.61 | 55.0 | 5.38e-01 | 96.9% | 95.7% |
| 4978030 | 7509.1.1.0 ↗ | a/b three-layered sandwiches › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like | 0.60 | 41.0 | 4.38e-01 | 77.3% | 80.0% |
| 1002416 | 2492.1.1.5 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas | 0.60 | 49.0 | 4.54e-01 | 88.3% | 87.7% |
| 4481179 | 207.1.1.58 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRRCT,LRR_8 | 0.58 | 44.0 | 3.02e-01 | 78.9% | 38.6% |
| 4964951 | 2007.15.1.18 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › DUF7509 | 0.56 | 40.0 | 3.71e-01 | 73.4% | 83.5% |
| 3192036 | 7526.1.1.1 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › IF-2 | 0.55 | 35.0 | 3.43e-01 | 98.4% | 55.9% |
| 3631502 | 7509.1.1.1 ↗ | a/b three-layered sandwiches › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › DUF34_NIF3 | 0.55 | 40.0 | 3.79e-01 | 76.6% | 83.9% |
| 4315699 | 300.1.1.7 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PP_kinase_C | 0.54 | 40.0 | 3.54e-01 | 76.6% | 88.9% |
| 4092009 | 300.1.1.7 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PP_kinase_C | 0.53 | 40.0 | 3.55e-01 | 79.7% | 87.2% |
| 4927886 | 7509.1.1.1 ↗ | a/b three-layered sandwiches › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › DUF34_NIF3 | 0.53 | 44.0 | 3.46e-01 | 89.8% | 95.5% |
| 3818658 | 7526.1.1.1 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › IF-2 | 0.52 | 33.0 | 3.29e-01 | 97.7% | 58.5% |
| 4177992 | 2002.1.1.49 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldolase | 0.52 | 42.0 | 3.72e-01 | 88.3% | 89.7% |
| 4984037 | 2484.4.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co | 0.51 | 40.0 | 3.90e-01 | 83.6% | 78.6% |
| 5049466 | 2484.4.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co | 0.50 | 38.0 | 4.06e-01 | 79.7% | 95.7% |
| 4034076 | 7509.1.1.1 ↗ | a/b three-layered sandwiches › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › NIF3 (NGG1p interacting factor 3)-like › DUF34_NIF3 | 0.50 | 37.0 | 3.89e-01 | 76.6% | 87.0% |
| 5012399 | 2484.4.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co | 0.50 | 39.0 | 4.00e-01 | 80.5% | 89.2% |
| 5025091 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.50 | 43.0 | 3.41e-01 | 96.9% | 100.0% |
D2
high
residues 144-351
Domain cluster:
rep: LSDeep1_scaffold_41_prodigal-single.1__X__X__00511__D278-386_572-664
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00117.35 best | GATase | 139.1 | 2.00e-40 | 93.3% | 99.0% |