←Back to structures

AGM11387.1

Arc-Vir

KC292026__AGM11387.1__HGTV1-61__00057

Identity

Accession:
KC292026 ↗
Protein ID:
AGM11387.1 ↗
Kingdom:
archaea

Quality

69.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Halomagnusviridae› Hagravirus› Halogranum_tailed_virus_1

TaxID: 1273749

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-59
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 54.0 4.57e-01 100.0% 89.5%
3cihA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 49.0 3.82e-01 87.0% 45.5%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.63 42.0 4.65e-01 88.9% 97.4%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.62 50.0 3.70e-01 100.0% 86.5%
2drpA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.61 39.0 4.25e-01 85.2% 100.0%
1jj2Y00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 43.0 3.90e-01 74.1% 64.4%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.61 39.0 4.32e-01 72.2% 87.5%
1qhuA01 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.61 43.0 2.99e-01 75.9% 25.7%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 45.0 3.12e-01 88.9% 94.6%
1vs9F02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.59 43.0 4.04e-01 81.5% 94.3%
1i3oF00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.59 49.0 4.21e-01 98.1% 63.4%
1a6zA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.58 46.0 3.31e-01 90.7% 96.1%
2cjgA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 43.0 3.37e-01 92.6% 57.1%
5zx8A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.57 49.0 3.44e-01 100.0% 81.7%
4czxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 44.0 2.81e-01 90.7% 24.4%
1f32A01 3.30.1120.50 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Pepsin inhibitor-3 0.56 46.0 4.27e-01 98.1% 71.6%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.56 47.0 3.38e-01 96.3% 58.0%
3us4A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 47.0 3.99e-01 100.0% 56.7%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 44.0 3.27e-01 100.0% 87.2%
2pvjA01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 46.0 3.05e-01 96.3% 57.2%
1k8iA01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.54 41.0 3.59e-01 100.0% 55.8%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 40.0 3.07e-01 81.5% 54.4%
1f32A02 3.30.1120.50 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Pepsin inhibitor-3 0.54 38.0 3.67e-01 94.4% 66.7%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.61e-01 96.3% 25.8%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 40.0 2.62e-01 90.7% 22.5%
2i50A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 37.0 2.90e-01 75.9% 49.2%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.52 45.0 2.97e-01 100.0% 24.2%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.51 45.0 2.94e-01 100.0% 40.7%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5022781 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.73 57.0 3.43e-01 85.2% 18.8%
3344139 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 57.0 5.75e-01 92.6% 92.7%
3503411 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 52.0 5.52e-01 88.9% 100.0%
3992839 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.69 49.0 5.26e-01 85.2% 93.3%
3940508 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.69 50.0 5.00e-01 90.7% 78.2%
3669824 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.68 58.0 5.79e-01 100.0% 92.7%
3403471 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.67 48.0 4.95e-01 94.4% 84.0%
3616640 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 53.0 4.36e-01 92.6% 46.7%
3752690 386.1.1.66 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Spt46 0.66 49.0 4.92e-01 92.6% 81.5%
3621229 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.65 46.0 4.32e-01 90.7% 58.6%
3535885 386.1.1.226 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Znf-C2H2_ZNF142 0.63 41.0 4.67e-01 83.3% 100.0%
3574509 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.63 46.0 4.18e-01 79.6% 86.7%
3658440 386.1.1.26 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 0.63 41.0 4.15e-01 96.3% 67.3%
4988402 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.61 45.0 4.04e-01 81.5% 87.5%
3523495 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 48.0 4.30e-01 90.7% 70.0%
3441817 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.60 51.0 5.25e-01 94.4% 100.0%
162112 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.60 46.0 4.24e-01 88.9% 73.7%
3479602 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.59 53.0 3.52e-01 100.0% 54.1%
3709449 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 49.0 3.12e-01 98.1% 24.4%
1489671 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.58 45.0 4.45e-01 85.2% 83.9%
3748299 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 43.0 4.33e-01 98.1% 85.5%
4389625 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.57 42.0 4.20e-01 79.6% 87.3%
4614679 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 40.0 4.17e-01 77.8% 90.0%
4945330 4294.1.1.11 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › ResIII 0.56 45.0 4.25e-01 94.4% 74.3%
3534814 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.56 44.0 4.19e-01 92.6% 75.7%
3478959 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 46.0 3.23e-01 100.0% 63.7%
3996808 3749.1.1.6 ↗ extended segments › 26S proteasome regulatory subunits C-terminal helices › 26S proteasome regulatory subunit RPN9 C-terminal helix › 26S proteasome regulatory subunit RPN9 C-terminal helix › Pepsin-I3 0.54 44.0 4.02e-01 87.0% 70.0%
4975908 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.53 45.0 2.97e-01 94.4% 23.6%
3583571 833.1.1.0 ↗ a+b duplicates or obligate multimers › Pepsin inhibitor-3 › Pepsin inhibitor-3 › Pepsin inhibitor-3 0.53 45.0 3.61e-01 94.4% 50.0%
5016434 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 39.0 3.59e-01 87.0% 74.7%
4168580 375.1.1.205 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2614 0.51 33.0 3.47e-01 70.4% 77.8%