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AGM11464.1

Arc-Vir

KC292026__AGM11464.1__HGTV1-167__00134

Identity

Accession:
KC292026 ↗
Protein ID:
AGM11464.1 ↗
Kingdom:
archaea

Quality

86.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Halomagnusviridae› Hagravirus› Halogranum_tailed_virus_1

TaxID: 1273749

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-121
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.75 67.0 5.57e-01 100.0% 92.0%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 50.0 3.24e-01 83.3% 24.4%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 47.0 3.12e-01 83.3% 23.7%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.61 44.0 4.17e-01 77.8% 95.6%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 3.74e-01 95.8% 45.2%
1st8A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.60 50.0 3.76e-01 95.8% 62.1%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.59 44.0 3.85e-01 80.6% 81.2%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 50.0 4.25e-01 95.8% 82.5%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.68e-01 95.8% 41.7%
4cciA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 44.0 3.07e-01 83.3% 67.5%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 4.06e-01 93.1% 71.0%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.58 42.0 3.54e-01 79.2% 90.1%
2cwsA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.17e-01 84.7% 54.6%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 43.0 4.27e-01 80.6% 90.8%
4m00A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 42.0 2.99e-01 81.9% 71.4%
3fy6A01 3.30.2210.10 Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily 0.56 40.0 3.63e-01 77.8% 97.2%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.56 43.0 3.28e-01 81.9% 68.5%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 3.75e-01 100.0% 57.3%
3h3lC00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.56 42.0 3.02e-01 81.9% 69.1%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.55 47.0 3.55e-01 94.4% 59.7%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 42.0 3.61e-01 90.3% 48.4%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.55 46.0 4.20e-01 94.4% 91.9%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 41.0 2.81e-01 80.6% 94.6%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.54 41.0 3.14e-01 90.3% 32.4%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 38.0 4.01e-01 73.6% 100.0%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 44.0 3.42e-01 95.8% 61.6%
1okqA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.51e-01 100.0% 45.7%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.35e-01 86.1% 56.0%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.89e-01 93.1% 23.5%
2q5fA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.52 41.0 3.34e-01 84.7% 79.9%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.52 38.0 2.98e-01 94.4% 35.2%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.37e-01 100.0% 43.6%
1boxA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.52 42.0 3.84e-01 95.8% 67.4%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 36.0 3.31e-01 75.0% 82.7%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 42.0 2.84e-01 98.6% 87.8%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3416385 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.76 50.0 3.61e-01 72.2% 25.1%
3839277 241.16.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › protein CagD › protein CagD › CagD 0.75 68.0 5.38e-01 100.0% 77.9%
3627144 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.73 49.0 3.58e-01 72.2% 26.3%
3937635 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.73 47.0 3.46e-01 70.8% 25.3%
3225057 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.71 48.0 3.50e-01 77.8% 27.0%
3233815 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.71 50.0 3.38e-01 83.3% 20.9%
3211176 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.68 47.0 3.21e-01 83.3% 20.4%
3227136 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.68 47.0 3.35e-01 83.3% 24.8%
4530314 375.13.1.0 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain 0.66 48.0 5.23e-01 93.1% 96.6%
3247669 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.66 47.0 3.22e-01 81.9% 21.2%
3884500 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.61 47.0 3.36e-01 81.9% 65.6%
3272228 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 49.0 3.27e-01 88.9% 29.1%
3509499 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.60 51.0 4.42e-01 98.6% 98.3%
3235531 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.60 45.0 3.16e-01 80.6% 24.2%
5014513 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 3.41e-01 73.6% 62.1%
3812869 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.60 49.0 4.39e-01 88.9% 84.0%
3230955 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 44.0 3.05e-01 80.6% 24.3%
4314504 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 44.0 3.59e-01 81.9% 42.2%
4589583 2008.1.1.191 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII 0.59 50.0 3.81e-01 94.4% 54.3%
4026536 220.1.1.53 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C 0.58 48.0 4.07e-01 93.1% 71.0%
3229102 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.58 41.0 2.91e-01 81.9% 22.0%
3940470 5.1.4.320 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.58 46.0 2.96e-01 90.3% 76.5%
3248668 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.57 42.0 4.08e-01 77.8% 93.8%
3423079 5.1.4.231 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_3 0.56 45.0 3.01e-01 90.3% 33.9%
1298746 10.1.1.45 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Bact_lectin 0.56 42.0 2.96e-01 81.9% 70.0%
3404445 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 50.0 3.79e-01 100.0% 47.6%
3177736 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 2.93e-01 100.0% 30.7%
3215907 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 41.0 2.88e-01 83.3% 24.1%
3213121 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.55 38.0 3.79e-01 72.2% 80.0%
3916780 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 42.0 3.02e-01 81.9% 47.4%
3482448 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 45.0 3.46e-01 94.4% 42.9%
3431244 5.1.4.122 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 0.54 44.0 2.93e-01 94.4% 27.4%
3814412 10.1.1.58 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin 0.53 43.0 3.14e-01 94.4% 57.4%
4975637 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.53 41.0 4.04e-01 88.9% 95.0%
3231483 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 46.0 3.48e-01 100.0% 60.0%
3990496 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 40.0 4.13e-01 97.2% 85.7%
5028466 304.56.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like 0.52 41.0 3.47e-01 84.7% 98.3%
4946341 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.52 40.0 2.79e-01 83.3% 28.2%
3714612 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 42.0 3.26e-01 90.3% 39.4%
4965146 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 44.0 2.85e-01 100.0% 64.3%
4024012 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 3.21e-01 97.2% 41.9%
D2 high residues 126-250
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3edyA02 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.56 47.0 3.45e-01 93.6% 91.5%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.54 22.0 3.18e-01 77.6% 81.7%
2in3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 29.0 3.48e-01 95.2% 81.5%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4863453 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 29.0 2.81e-01 94.4% 47.8%