←Back to structures
AGM11468.1
Arc-VirKC292026__AGM11468.1__HGTV1-171__00138
Identity
- Accession:
- KC292026 ↗
- Protein ID:
- AGM11468.1 ↗
- Kingdom:
- archaea
Quality
73.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Thumleimavirales›
Halomagnusviridae›
Hagravirus›
Halogranum_tailed_virus_1
TaxID: 1273749
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-92
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.67 | 31.0 | 2.97e-01 | 85.6% | 36.3% |
| 3pvlA03 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.64 | 43.0 | 3.93e-01 | 98.9% | 52.5% |
| 2a0uB01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.62 | 50.0 | 4.18e-01 | 88.9% | 85.0% |
| 1uyvB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.61 | 46.0 | 3.31e-01 | 82.2% | 39.9% |
| 2raeA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 48.0 | 4.22e-01 | 86.7% | 80.3% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 42.0 | 3.67e-01 | 100.0% | 49.2% |
| 2ivxB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 40.0 | 3.51e-01 | 100.0% | 46.4% |
| 7byjA01 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.57 | 40.0 | 3.71e-01 | 100.0% | 55.0% |
| 6cgvM01 | 1.20.120.1500 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa | 0.56 | 42.0 | 3.73e-01 | 80.0% | 84.3% |
| 2fnaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 4.21e-01 | 73.3% | 97.3% |
| 1hqvA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 46.0 | 3.67e-01 | 88.9% | 72.5% |
| 2bl0C01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 39.0 | 4.20e-01 | 76.7% | 89.3% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.55 | 36.0 | 3.92e-01 | 100.0% | 86.6% |
| 3llkA02 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.54 | 43.0 | 3.81e-01 | 90.0% | 59.4% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 41.0 | 4.20e-01 | 88.9% | 84.7% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 38.0 | 3.97e-01 | 76.7% | 83.5% |
| 1oqcA00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.53 | 41.0 | 3.83e-01 | 84.4% | 76.8% |
| 4hd1A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 45.0 | 3.36e-01 | 100.0% | 44.1% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.52 | 34.0 | 3.26e-01 | 87.8% | 57.0% |
| 1vt0k00 | 1.10.3230.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) | 0.52 | 39.0 | 3.34e-01 | 80.0% | 55.9% |
| 3mfiA03 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.52 | 33.0 | 3.57e-01 | 70.0% | 76.3% |
| 3h74A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 44.0 | 3.22e-01 | 100.0% | 48.9% |
| 3v2lA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.51 | 40.0 | 3.73e-01 | 86.7% | 70.8% |
| 2rekA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 44.0 | 3.60e-01 | 95.6% | 51.7% |
| 2uytA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 42.0 | 3.05e-01 | 87.8% | 50.8% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.51 | 32.0 | 3.20e-01 | 85.6% | 59.8% |
| 5fb0A02 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 37.0 | 3.50e-01 | 77.8% | 66.1% |
| 2i53A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 41.0 | 3.55e-01 | 100.0% | 55.9% |
| 3r72A00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.50 | 39.0 | 3.59e-01 | 85.6% | 69.7% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3592245 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.71 | 44.0 | 4.52e-01 | 100.0% | 65.9% |
| 4609007 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.68 | 39.0 | 4.83e-01 | 72.2% | 100.0% |
| 3970612 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.68 | 52.0 | 4.57e-01 | 84.4% | 62.1% |
| 3736802 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 32.0 | 3.86e-01 | 80.0% | 68.3% |
| 3499902 | 181.1.1.12 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SCAF11-like_C | 0.63 | 41.0 | 4.47e-01 | 100.0% | 81.1% |
| 3405108 | 108.2.1.1 ↗ | alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › PBP_GOBP | 0.60 | 46.0 | 4.11e-01 | 82.2% | 94.6% |
| 4955536 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.58 | 42.0 | 3.17e-01 | 87.8% | 31.4% |
| 3712603 | 1091.1.1.1 ↗ | alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s | 0.58 | 40.0 | 4.40e-01 | 81.1% | 94.3% |
| 3958085 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.56 | 36.0 | 4.04e-01 | 96.7% | 84.1% |
| 3405917 | 108.2.1.1 ↗ | alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › PBP_GOBP | 0.56 | 41.0 | 3.74e-01 | 77.8% | 59.8% |
| 3741080 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.56 | 40.0 | 3.30e-01 | 77.8% | 63.9% |
| 3278587 | 191.1.1.1 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 | 0.56 | 46.0 | 3.89e-01 | 92.2% | 96.8% |
| 3495478 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.56 | 45.0 | 4.00e-01 | 87.8% | 91.5% |
| 3498509 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.55 | 45.0 | 4.00e-01 | 87.8% | 91.5% |
| 4958201 | 604.39.1.1 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › CbiM | 0.54 | 44.0 | 3.46e-01 | 92.2% | 75.7% |
| 3432597 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.53 | 33.0 | 3.16e-01 | 76.7% | 52.4% |
| 3619615 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 39.0 | 3.77e-01 | 76.7% | 92.0% |
| 3232086 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 42.0 | 4.17e-01 | 85.6% | 95.8% |
| 5060163 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.52 | 32.0 | 3.59e-01 | 75.6% | 83.1% |
| 3589948 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.52 | 46.0 | 4.02e-01 | 100.0% | 92.9% |
| 3283663 | 191.1.1.44 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_43 | 0.52 | 43.0 | 4.01e-01 | 93.3% | 81.7% |
| 4027365 | 138.1.1.2 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C | 0.52 | 40.0 | 4.01e-01 | 84.4% | 90.5% |
| 4154382 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.51 | 40.0 | 3.27e-01 | 85.6% | 82.7% |
D2
high
residues 95-181
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3r44A01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.58 | 51.0 | 3.33e-01 | 100.0% | 63.0% |
| 3e53A00 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.56 | 50.0 | 3.21e-01 | 100.0% | 55.3% |
| 2iuyA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.56 | 38.0 | 3.08e-01 | 70.1% | 76.1% |
| 4fuqC01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.56 | 50.0 | 3.26e-01 | 100.0% | 63.3% |
| 2panA01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.54 | 39.0 | 3.22e-01 | 77.0% | 94.1% |
| 6ks6Q03 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.52 | 46.0 | 3.86e-01 | 100.0% | 77.6% |
| 2nxwA01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.51 | 37.0 | 3.02e-01 | 77.0% | 86.1% |
| 4h5gA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 36.0 | 3.51e-01 | 96.6% | 68.4% |
| 2c81A01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.50 | 35.0 | 2.60e-01 | 74.7% | 58.5% |
| 1mdbA01 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 42.0 | 3.48e-01 | 93.1% | 81.6% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3289686 | 3703.1.1.0 ↗ | a/b three-layered sandwiches › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain | 0.59 | 47.0 | 4.65e-01 | 100.0% | 80.0% |
| 5024483 | 2003.1.1.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › TrkA_N | 0.57 | 38.0 | 3.43e-01 | 71.3% | 97.0% |
| 4938630 | 7574.1.1.7 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_N | 0.56 | 38.0 | 3.15e-01 | 71.3% | 85.9% |
| 4954966 | 7523.1.1.4 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 | 0.52 | 40.0 | 2.92e-01 | 82.8% | 45.5% |
| 3969609 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.52 | 43.0 | 3.66e-01 | 93.1% | 76.7% |
| 4242967 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.52 | 43.0 | 3.66e-01 | 93.1% | 79.3% |
| 4446244 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.52 | 43.0 | 3.68e-01 | 93.1% | 81.4% |
| 3201839 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.52 | 43.0 | 3.72e-01 | 93.1% | 80.0% |
| 3289202 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 43.0 | 3.67e-01 | 93.1% | 80.0% |
| 4606868 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 43.0 | 3.60e-01 | 93.1% | 75.5% |
| 3286186 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 43.0 | 3.59e-01 | 93.1% | 82.6% |
| 3966399 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 42.0 | 3.64e-01 | 93.1% | 81.4% |
| 4142091 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 42.0 | 3.50e-01 | 92.0% | 73.8% |
| 3944366 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 42.0 | 3.72e-01 | 93.1% | 86.7% |
| 3163715 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 42.0 | 3.72e-01 | 90.8% | 84.0% |
| 4015552 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.50 | 42.0 | 3.51e-01 | 93.1% | 76.1% |
| 3972928 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 42.0 | 3.62e-01 | 93.1% | 81.4% |
| 5024383 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 41.0 | 3.54e-01 | 93.1% | 80.7% |
| 4552382 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 42.0 | 3.47e-01 | 93.1% | 76.2% |
| 4320958 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 42.0 | 3.50e-01 | 93.1% | 76.8% |
| 4506547 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 42.0 | 3.37e-01 | 93.1% | 67.4% |
| 4258452 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 42.0 | 3.69e-01 | 92.0% | 81.5% |
| 4230708 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 42.0 | 3.62e-01 | 93.1% | 79.3% |