←Back to structures

AGM11509.1

Arc-Vir

KC292026__AGM11509.1__HGTV1-212__00179

Identity

Accession:: KC292026 ↗
Protein ID:: AGM11509.1 ↗
Kingdom:: archaea

Quality

92.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Halomagnusviridae› Hagravirus› Halogranum_tailed_virus_1

TaxID: 1273749

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-22_175-239

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ne5B04	6.10.140.730	Special › Helix non-globular › Helix Hairpins ›	0.57	33.0	4.09e-01	100.0%	98.0%
4cthA02	1.10.1380.10	Mainly Alpha › Orthogonal Bundle › Neutral endopeptidase; domain 2 › Neutral endopeptidase , domain2	0.54	44.0	3.01e-01	95.4%	79.9%
2x1dA02	1.10.10.2120	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.53	41.0	4.42e-01	86.2%	98.6%
1x3aA00	1.10.3970.10	Mainly Alpha › Orthogonal Bundle › BSD domain-like fold › BSD domain	0.53	40.0	3.89e-01	90.8%	71.0%
5dikA00	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.52	35.0	3.27e-01	88.5%	53.6%
2q6fB03	1.10.1840.10	Mainly Alpha › Orthogonal Bundle › main proteinase (3clpro) structure, domain 3 › main proteinase (3clpro) structure, domain 3	0.51	44.0	4.29e-01	100.0%	86.0%
8gtyA02	3.30.420.150	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2	0.51	41.0	3.32e-01	88.5%	82.7%
3uitA02	1.20.1270.460	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.51	42.0	3.70e-01	92.0%	69.2%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4237372	182.1.1.1 ↗	alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain › FAD_binding_7	0.54	45.0	3.03e-01	96.6%	72.5%
1390912	4044.1.1.1 ↗	alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane	0.52	38.0	3.05e-01	78.2%	89.4%
4024111	7583.1.1.1 ↗	a/b three-layered sandwiches › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › ARMT1-like_dom	0.52	41.0	2.93e-01	90.8%	87.2%
4408850	4044.1.1.0 ↗	alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins	0.52	39.0	3.24e-01	80.5%	88.4%
3575981	101.1.11.0 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix	0.51	40.0	4.14e-01	82.8%	96.2%
1103981	6001.1.1.1 ↗	alpha arrays › Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain › Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain › Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain › Peptidase_C30	0.51	44.0	4.02e-01	100.0%	74.0%

D2 high residues 26-173

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3n0uA02	1.10.340.30	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2	0.86	62.0	7.18e-01	91.2%	100.0%
4uobA02	1.10.340.30	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2	0.81	66.0	7.14e-01	98.6%	100.0%
1pu6A02	1.10.340.30	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2	0.80	63.0	6.89e-01	97.3%	98.4%
2nobA03	1.10.340.30	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2	0.76	62.0	6.70e-01	88.5%	100.0%
2q58B00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.55	48.0	3.78e-01	97.3%	98.8%
1j8yF01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.54	28.0	3.60e-01	84.5%	86.0%
2yviA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.51	30.0	3.75e-01	81.8%	95.5%
1n1bB02	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.51	43.0	3.53e-01	95.3%	74.8%
1n5uA05	1.10.246.10	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.51	32.0	3.65e-01	82.4%	84.8%
1sdiA00	1.10.3890.10	Mainly Alpha › Orthogonal Bundle › YcfC-like › HflD-like	0.50	42.0	3.74e-01	89.2%	82.6%
2gruA02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.50	41.0	3.75e-01	91.2%	65.5%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3723417	102.1.2.0 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase	0.77	72.0	6.00e-01	100.0%	72.7%
5012769	102.1.2.1 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD	0.75	64.0	5.54e-01	89.2%	67.4%
3886729	102.1.2.2 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD,EndIII_4Fe-2S	0.69	65.0	5.23e-01	100.0%	60.4%
4930579	5052.1.1.0 ↗	alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein	0.55	46.0	3.75e-01	90.5%	63.5%
3590978	102.1.2.30 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › AI-2E_transport	0.53	39.0	3.25e-01	77.7%	91.4%