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AGM11560.1

Arc-Vir

KC292026__AGM11560.1__HGTV1-263__00230

Identity

Accession:
KC292026 ↗
Protein ID:
AGM11560.1 ↗
Kingdom:
archaea

Quality

73.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-87
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 52.0 5.80e-01 98.8% 91.9%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 48.0 5.17e-01 92.6% 76.1%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 48.0 5.03e-01 92.6% 75.0%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 40.0 4.57e-01 84.0% 73.8%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.86e-01 100.0% 95.8%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 49.0 5.37e-01 85.2% 92.3%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 5.57e-01 98.8% 94.3%
8djfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.67 51.0 3.50e-01 81.5% 34.5%
4kujA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 52.0 4.31e-01 90.1% 78.0%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.64 39.0 4.71e-01 70.4% 96.2%
2cn2A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 50.0 3.14e-01 82.7% 18.9%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.63 50.0 4.27e-01 84.0% 61.9%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 39.0 4.79e-01 71.6% 100.0%
5ih0A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 47.0 4.48e-01 79.0% 97.8%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 53.0 4.70e-01 95.1% 75.2%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 37.0 4.67e-01 80.2% 98.0%
3f7wA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 47.0 4.54e-01 82.7% 97.8%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 44.0 4.39e-01 76.5% 90.2%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 51.0 4.12e-01 100.0% 49.7%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 51.0 4.29e-01 100.0% 69.1%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.59 51.0 4.16e-01 93.8% 53.4%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 50.0 3.35e-01 92.6% 27.9%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.17e-01 95.1% 44.9%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.58 45.0 4.29e-01 82.7% 92.6%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 52.0 4.25e-01 98.8% 73.1%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 44.0 2.99e-01 81.5% 23.3%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 50.0 3.62e-01 95.1% 78.4%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 52.0 3.72e-01 100.0% 35.9%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 52.0 4.21e-01 100.0% 82.0%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.56 50.0 4.10e-01 100.0% 57.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 40.0 4.43e-01 90.1% 95.3%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 43.0 4.04e-01 81.5% 89.8%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.56 51.0 4.44e-01 100.0% 70.6%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 45.0 4.44e-01 90.1% 95.5%
8axiA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 46.0 2.98e-01 90.1% 45.2%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 45.0 3.03e-01 95.1% 73.7%
2c4xA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.71e-01 74.1% 83.0%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 4.13e-01 92.6% 83.6%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 43.0 2.98e-01 91.4% 26.5%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 3.66e-01 86.4% 63.8%
1ryp200 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 40.0 2.84e-01 80.2% 51.1%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 47.0 3.91e-01 100.0% 58.9%
6zxfz01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 45.0 3.96e-01 96.3% 89.4%
3iiiA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.95e-01 90.1% 50.7%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.58e-01 92.6% 75.8%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.52 43.0 3.41e-01 93.8% 59.3%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 43.0 3.52e-01 92.6% 77.6%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 42.0 3.36e-01 92.6% 79.9%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 51.0 6.07e-01 92.6% 96.4%
4605602 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 50.0 5.59e-01 91.4% 80.0%
4964768 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 53.0 6.06e-01 97.5% 95.0%
3564972 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 52.0 5.55e-01 97.5% 82.9%
3660964 4.1.1.6 beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.75 49.0 4.52e-01 93.8% 54.0%
4271974 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.73 48.0 5.36e-01 93.8% 85.9%
3586469 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.72 53.0 5.26e-01 100.0% 74.1%
3610464 206.1.1.7 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase 0.70 57.0 3.58e-01 87.7% 47.1%
3926120 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.70 52.0 4.28e-01 100.0% 44.1%
3725498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.91e-01 98.8% 97.1%
3801220 206.1.1.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.70 54.0 3.37e-01 82.7% 52.7%
3495447 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.69 49.0 4.30e-01 96.3% 50.0%
4566232 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 49.0 3.24e-01 72.8% 43.7%
4679936 206.1.1.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.69 56.0 3.59e-01 88.9% 65.7%
3639167 206.1.1.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.69 52.0 3.30e-01 80.2% 28.4%
3935716 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.69 53.0 5.48e-01 98.8% 88.0%
3274695 206.1.1.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.68 52.0 3.37e-01 82.7% 57.7%
3255575 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 52.0 3.41e-01 81.5% 26.2%
3491615 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.67 50.0 3.48e-01 96.3% 25.2%
3431417 9.2.1.4 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N 0.66 57.0 4.77e-01 96.3% 94.3%
5024617 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.66 58.0 5.52e-01 100.0% 83.2%
3549321 4.11.1.5 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.64 51.0 4.11e-01 100.0% 43.8%
3262615 206.1.1.49 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF5898 0.64 52.0 4.22e-01 90.1% 61.3%
4951148 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 49.0 3.16e-01 81.5% 23.9%
4929262 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.64 51.0 4.11e-01 100.0% 44.5%
3396897 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 45.0 4.99e-01 88.9% 93.7%
3379143 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.64 48.0 3.33e-01 79.0% 40.4%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.64 46.0 4.97e-01 93.8% 93.8%
3176265 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.63 52.0 4.18e-01 100.0% 46.5%
3989712 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.63 49.0 3.25e-01 81.5% 39.3%
4383895 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 55.0 3.72e-01 98.8% 30.6%
4381207 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.62 49.0 3.29e-01 82.7% 40.5%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.98e-01 95.1% 95.4%
3499443 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 47.0 2.98e-01 81.5% 25.3%
4677581 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.62 48.0 3.22e-01 81.5% 40.5%
4642857 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 53.0 5.34e-01 100.0% 96.2%
3259422 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 51.0 4.26e-01 91.4% 72.1%
3614740 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.61 51.0 4.41e-01 93.8% 78.5%
3989353 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.61 50.0 4.34e-01 90.1% 97.6%
5080798 4.17.1.0 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like 0.61 46.0 4.80e-01 93.8% 89.3%
3539349 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.60 44.0 3.14e-01 77.8% 29.6%
3252223 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 46.0 3.03e-01 84.0% 30.6%
3706524 5.1.2.33 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.59 47.0 3.26e-01 88.9% 50.2%
1097232 3180.1.1.1 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.59 45.0 4.19e-01 84.0% 85.0%
3224107 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 51.0 3.22e-01 95.1% 44.5%
3973549 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 52.0 3.55e-01 98.8% 29.2%
3741277 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.59 48.0 3.15e-01 90.1% 98.9%
3624726 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 44.0 2.93e-01 81.5% 24.9%
3931872 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 52.0 3.44e-01 98.8% 33.8%
3670066 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.58 52.0 4.21e-01 100.0% 52.9%
3940587 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.58 44.0 2.97e-01 81.5% 32.9%
3693368 1205.2.1.1 a+b two layers › C-terminal domain of CdiA toxin › C-terminal domain of P. aeruginosa CdiA › C-terminal domain of P. aeruginosa CdiA › PF31217 0.58 44.0 3.95e-01 82.7% 100.0%
4387111 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 50.0 5.07e-01 100.0% 97.5%
5034832 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.81e-01 98.8% 98.6%
3240493 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.57 41.0 2.94e-01 77.8% 29.6%
3887377 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.55 47.0 3.27e-01 97.5% 91.2%
None 0.54 47.0 3.29e-01 96.3% 39.6%
5031673 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 49.0 4.48e-01 100.0% 77.1%
3591361 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.54 47.0 3.21e-01 96.3% 37.3%
3438797 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 44.0 2.90e-01 90.1% 29.3%
5035308 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.53 46.0 3.44e-01 96.3% 49.3%
4530545 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.52 45.0 4.24e-01 92.6% 87.4%
4986443 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.52 44.0 3.15e-01 97.5% 41.1%
3505929 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.51 44.0 3.48e-01 97.5% 60.0%
5012521 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 42.0 3.21e-01 100.0% 94.9%
5058238 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.51 43.0 3.16e-01 97.5% 47.2%
3231481 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 41.0 3.03e-01 88.9% 70.2%