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AGM11597.1

Arc-Vir

KC292026__AGM11597.1__HGTV1-300__00267

Identity

Accession:
KC292026 ↗
Protein ID:
AGM11597.1 ↗
Kingdom:
archaea

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Halomagnusviridae› Hagravirus› Halogranum_tailed_virus_1

TaxID: 1273749

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 90-144
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kzxA02 1.10.150.730 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.63 44.0 4.26e-01 72.7% 80.6%
1zs7A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.63 43.0 3.62e-01 74.5% 60.6%
2f7lA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.62 45.0 3.95e-01 78.2% 92.9%
4isyC01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 45.0 3.34e-01 80.0% 67.6%
2pdoA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 43.0 3.36e-01 78.2% 72.6%
1a1wA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.58 42.0 3.83e-01 83.6% 89.2%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 42.0 3.66e-01 80.0% 77.9%
4j2gA00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.56 49.0 3.35e-01 100.0% 47.5%
1peqA03 1.10.1650.20 Mainly Alpha › Orthogonal Bundle › 50s Ribosomal Protein L19e, Chain O, domain 1 › 0.56 41.0 4.23e-01 92.7% 86.8%
3d8pB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 39.0 2.95e-01 80.0% 60.6%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.54 40.0 3.80e-01 80.0% 71.0%
4c23B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 39.0 2.71e-01 83.6% 53.8%
5c8qB02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.54 31.0 3.33e-01 72.7% 65.2%
2hz7A05 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.54 40.0 3.07e-01 100.0% 35.2%
3efaA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 41.0 3.10e-01 87.3% 66.4%
4b8vA03 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.52 32.0 3.38e-01 76.4% 69.4%
4b8vA02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.51 32.0 2.96e-01 74.5% 46.6%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.51 37.0 3.67e-01 83.6% 77.4%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 2.93e-01 83.6% 90.5%
3lo3A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 40.0 3.46e-01 92.7% 98.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4058899 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.58 41.0 3.08e-01 76.4% 64.1%
4950129 298.2.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE 0.57 40.0 2.92e-01 74.5% 55.2%
4502232 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.55 40.0 3.63e-01 80.0% 93.8%
3740166 206.1.1.28 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase 0.54 37.0 2.28e-01 70.9% 36.6%
4682556 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.54 38.0 3.48e-01 76.4% 77.5%
3924816 859.1.1.0 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.54 36.0 2.71e-01 70.9% 39.3%
3493925 377.1.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e 0.53 36.0 3.40e-01 100.0% 57.1%
3883720 7575.1.1.1 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14 0.51 40.0 2.75e-01 89.1% 45.8%
3517460 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.51 32.0 3.24e-01 78.2% 63.6%
3501650 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 41.0 3.35e-01 96.4% 73.0%
5000612 304.19.1.0 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain 0.51 36.0 3.40e-01 78.2% 88.6%
3846469 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.50 32.0 2.73e-01 76.4% 38.9%
D2 medium residues 35-89
PDB
Domain cluster: representative
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3882475 5050.1.1.6 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.69 60.0 3.85e-01 98.2% 75.8%
4964154 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.67 51.0 3.23e-01 87.3% 19.7%