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AGM11598.1

Arc-Vir

KC292026__AGM11598.1__HGTV1-301__00268

Identity

Accession:
KC292026 ↗
Protein ID:
AGM11598.1 ↗
Kingdom:
archaea

Quality

77.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Halomagnusviridae› Hagravirus› Halogranum_tailed_virus_1

TaxID: 1273749

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-39
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vq8300 3.10.450.80 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 52.0 4.13e-01 94.9% 81.5%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 45.0 3.97e-01 92.3% 61.4%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 42.0 4.21e-01 92.3% 71.8%
4qmgC01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 45.0 3.14e-01 89.7% 62.9%
3qokA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 43.0 3.31e-01 92.3% 32.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.09e-01 94.9% 67.8%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 3.73e-01 94.9% 56.2%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.01e-01 92.3% 75.0%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 3.43e-01 94.9% 39.0%
6iouA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 41.0 3.20e-01 87.2% 33.0%
4gniA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.57 41.0 3.87e-01 94.9% 61.4%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.57 41.0 4.02e-01 87.2% 87.5%
6lf2B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 42.0 3.18e-01 94.9% 43.5%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 3.62e-01 94.9% 51.6%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 3.71e-01 94.9% 50.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 3.87e-01 94.9% 66.1%
1f89A00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.56 43.0 2.73e-01 97.4% 47.2%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.56 40.0 2.75e-01 89.7% 67.5%
1f20A02 1.20.990.10 Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 0.56 43.0 2.99e-01 92.3% 44.0%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.56 44.0 3.24e-01 100.0% 31.8%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 3.55e-01 94.9% 48.8%
4mb7A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 37.0 2.67e-01 87.2% 20.4%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.08e-01 97.4% 59.2%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 3.31e-01 89.7% 82.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.77e-01 94.9% 67.9%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 3.59e-01 94.9% 57.4%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 36.0 3.55e-01 87.2% 64.6%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 38.0 3.01e-01 97.4% 53.7%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.52 38.0 2.66e-01 84.6% 43.5%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.14e-01 94.9% 36.5%
1d7bA00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.52 39.0 2.66e-01 92.3% 26.5%
1uwvA03 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 36.0 2.69e-01 92.3% 23.4%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.27e-01 92.3% 56.0%
5h7jA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 39.0 3.07e-01 94.9% 46.3%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 3.76e-01 92.3% 77.6%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 37.0 3.06e-01 92.3% 38.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.39e-01 100.0% 72.4%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.55e-01 94.9% 60.3%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.33e-01 94.9% 54.8%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.50 38.0 2.59e-01 100.0% 20.4%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3237336 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 65.0 6.04e-01 94.9% 76.0%
3990887 375.1.1.89 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like 0.74 60.0 5.48e-01 94.9% 70.9%
5028955 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 55.0 5.53e-01 97.4% 87.5%
2849983 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.68 53.0 4.17e-01 94.9% 97.9%
5001969 375.1.1.338 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7479 0.61 47.0 3.99e-01 97.4% 52.5%
3333339 4.8.1.34 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_SEND1 0.61 44.0 3.86e-01 92.3% 49.2%
3704344 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 45.0 3.99e-01 94.9% 52.3%
3511007 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.59 43.0 3.16e-01 92.3% 27.5%
3391894 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.58 43.0 3.69e-01 94.9% 47.1%
3744277 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.58 46.0 4.38e-01 100.0% 76.0%
3485727 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 43.0 3.41e-01 92.3% 36.8%
3535298 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 45.0 3.62e-01 94.9% 43.3%
None — 0.57 43.0 2.94e-01 94.9% 21.2%
3407820 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 44.0 3.62e-01 94.9% 50.6%
3877938 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 44.0 3.58e-01 94.9% 46.7%
3351249 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.57 45.0 3.33e-01 97.4% 64.8%
3707929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 3.06e-01 94.9% 40.0%
3547102 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 44.0 3.61e-01 94.9% 45.9%
3407827 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 44.0 3.62e-01 94.9% 45.9%
3768095 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 45.0 3.56e-01 97.4% 77.9%
3547093 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 43.0 3.50e-01 94.9% 43.3%
4943011 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.56 43.0 3.40e-01 92.3% 50.5%
153172 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 43.0 3.47e-01 94.9% 43.3%
3240000 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 43.0 3.80e-01 89.7% 60.0%
3883165 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 43.0 3.43e-01 100.0% 78.0%
3547089 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 43.0 3.51e-01 97.4% 44.4%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.55 42.0 3.68e-01 94.9% 55.4%
4851967 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.54 39.0 3.63e-01 92.3% 71.0%
3879068 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 41.0 3.41e-01 92.3% 45.9%
3816553 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.54 42.0 4.00e-01 100.0% 74.5%
3407853 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 42.0 3.38e-01 94.9% 43.3%
4000403 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.54 40.0 3.88e-01 92.3% 76.0%
3507338 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 3.73e-01 94.9% 61.7%
3231263 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.54 40.0 3.88e-01 94.9% 76.0%
4029670 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.54 39.0 2.98e-01 92.3% 38.4%
3538560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 4.14e-01 94.9% 90.0%
3274551 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 41.0 3.52e-01 94.9% 52.0%
3395948 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.53 39.0 3.74e-01 94.9% 70.9%
3553413 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.53 41.0 3.35e-01 94.9% 60.0%
1263713 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.53 40.0 3.77e-01 94.9% 69.2%
3653195 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 40.0 3.80e-01 87.2% 90.0%
3315096 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.83e-01 87.2% 94.3%
3598055 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 2.85e-01 94.9% 25.3%
3710893 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.02e-01 97.4% 50.8%
3906671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.72e-01 87.2% 80.0%
3629138 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 40.0 3.62e-01 92.3% 61.7%
3794066 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.52 38.0 3.57e-01 97.4% 86.7%
3513418 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.52 37.0 3.61e-01 89.7% 73.3%
3768116 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.51 39.0 2.56e-01 94.9% 20.5%
3515495 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.20e-01 100.0% 82.1%
3881121 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 40.0 3.17e-01 97.4% 76.0%
4278212 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.51 38.0 2.85e-01 92.3% 36.9%
3620016 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 38.0 3.56e-01 94.9% 63.6%
3712993 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 38.0 3.28e-01 92.3% 58.7%
3397846 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 38.0 3.63e-01 94.9% 67.3%
3593640 2002.1.1.56 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus 0.50 38.0 2.31e-01 97.4% 74.4%
3938274 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.50 36.0 2.40e-01 87.2% 16.6%
4012780 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 36.0 2.75e-01 92.3% 35.6%