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AGM11767.1

Arc-Vir

KC292027__AGM11767.1__HCTV5-163__00162

Identity

Accession:
KC292027 ↗
Protein ID:
AGM11767.1 ↗
Kingdom:
archaea

Quality

68.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-82
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 60.0 6.29e-01 71.4% 79.7%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 54.0 5.45e-01 70.0% 67.1%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 60.0 5.77e-01 77.1% 68.8%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 54.0 5.19e-01 70.0% 60.0%
2ijlB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 55.0 4.70e-01 70.0% 47.7%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 55.0 5.42e-01 70.0% 65.3%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.81 59.0 4.62e-01 78.6% 38.0%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 60.0 5.17e-01 78.6% 54.3%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 54.0 4.97e-01 75.7% 55.1%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.80 54.0 3.77e-01 70.0% 23.8%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 57.0 5.89e-01 74.3% 85.1%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 58.0 6.00e-01 78.6% 83.1%
3c57B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 54.0 6.18e-01 75.7% 100.0%
3hhgE01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 51.0 4.76e-01 71.4% 53.4%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 53.0 5.57e-01 70.0% 88.9%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 59.0 6.04e-01 80.0% 89.6%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 58.0 6.07e-01 80.0% 93.7%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 51.0 5.04e-01 70.0% 64.5%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.76 46.0 3.50e-01 78.6% 27.7%
1b9mB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 51.0 4.58e-01 71.4% 53.5%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 61.0 5.42e-01 97.1% 93.3%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 4.40e-01 71.4% 54.8%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.68 48.0 4.01e-01 75.7% 46.0%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 3.87e-01 74.3% 41.9%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 44.0 4.52e-01 72.9% 74.6%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 45.0 3.41e-01 75.7% 34.6%
3hl6A02 1.20.58.700 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 40.0 3.35e-01 82.9% 38.3%
4fx0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 3.75e-01 74.3% 45.1%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.70e-01 78.6% 78.9%
1a9xA04 1.10.1030.10 Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain 0.63 50.0 3.95e-01 88.6% 73.3%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.62 49.0 4.97e-01 84.3% 86.8%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.62 52.0 3.58e-01 95.7% 75.0%
2yveB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 44.0 3.40e-01 77.1% 67.4%
3fm5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.05e-01 90.0% 71.5%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 3.88e-01 72.9% 58.5%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.60 44.0 3.10e-01 77.1% 64.3%
3bcgA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 43.0 3.04e-01 75.7% 41.5%
3cjdA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 42.0 3.18e-01 75.7% 63.7%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.59 47.0 4.20e-01 87.1% 75.2%
3npiB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 42.0 3.07e-01 77.1% 31.0%
3frwB00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.58 46.0 4.16e-01 87.1% 84.4%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 40.0 3.03e-01 74.3% 42.4%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.21e-01 90.0% 85.1%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.57 41.0 3.29e-01 75.7% 50.7%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 43.0 4.10e-01 81.4% 100.0%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 39.0 3.45e-01 74.3% 63.5%
3htaC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 42.0 3.16e-01 88.6% 41.8%
3rlfF01 1.20.58.370 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › MalF N-terminal region-like 0.53 37.0 3.57e-01 100.0% 61.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4034200 101.1.1.275 alpha arrays › HTH › HTH › Three-helical HTH › GerE 0.89 60.0 6.27e-01 70.0% 75.4%
4139052 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.89 60.0 5.87e-01 70.0% 65.3%
5013051 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 68.0 5.39e-01 84.3% 43.8%
3946608 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.87 58.0 5.86e-01 70.0% 68.6%
3090474 4020.1.1.0 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.87 67.0 5.25e-01 82.9% 41.3%
3283527 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.87 60.0 5.72e-01 71.4% 62.5%
3974118 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.87 59.0 5.33e-01 70.0% 56.7%
4031535 101.1.1.275 alpha arrays › HTH › HTH › Three-helical HTH › GerE 0.87 60.0 6.42e-01 71.4% 83.3%
4321251 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.85 61.0 5.85e-01 75.7% 65.8%
3959868 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 60.0 5.85e-01 72.9% 69.3%
3944331 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.85 58.0 5.50e-01 71.4% 61.3%
3279743 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.85 60.0 6.02e-01 75.7% 72.9%
3741290 101.1.1.201 alpha arrays › HTH › HTH › Three-helical HTH › Bot1p 0.85 57.0 5.22e-01 70.0% 54.4%
3966025 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.84 56.0 5.53e-01 71.4% 64.9%
4303963 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.84 62.0 6.13e-01 78.6% 74.7%
3962431 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.84 57.0 5.55e-01 75.7% 65.3%
3972272 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.83 57.0 5.62e-01 75.7% 66.7%
3951829 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.83 62.0 5.80e-01 80.0% 64.7%
3288090 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.83 60.0 6.06e-01 75.7% 75.7%
3590541 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.83 56.0 4.03e-01 72.9% 27.2%
3972638 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.82 58.0 6.06e-01 74.3% 84.6%
4492035 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.82 55.0 5.53e-01 71.4% 68.6%
4031756 101.1.2.645 alpha arrays › HTH › HTH › winged helix domain › HTH_40 0.82 55.0 5.08e-01 70.0% 56.5%
3968151 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.82 55.0 5.15e-01 70.0% 57.6%
4979740 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.81 55.0 5.73e-01 70.0% 75.4%
4205790 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 61.0 5.81e-01 80.0% 68.8%
1177545 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.81 53.0 5.41e-01 70.0% 69.1%
3951084 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.81 61.0 6.12e-01 78.6% 78.6%
3407600 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 53.0 5.65e-01 71.4% 78.3%
3976506 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.81 54.0 5.27e-01 71.4% 64.0%
3971990 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.81 55.0 5.09e-01 70.0% 57.6%
4007717 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.81 59.0 5.60e-01 75.7% 66.3%
3959929 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 60.0 5.80e-01 80.0% 72.5%
3955987 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 60.0 5.36e-01 80.0% 57.9%
3286659 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.80 57.0 5.75e-01 77.1% 74.3%
3959876 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.79 57.0 5.06e-01 75.7% 55.0%
4289285 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.79 59.0 5.43e-01 80.0% 65.6%
3972270 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.79 53.0 5.36e-01 70.0% 70.0%
4661582 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.78 56.0 4.71e-01 74.3% 51.8%
4245572 101.1.8.16 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › HTH_40 0.77 50.0 5.08e-01 70.0% 67.1%
5056682 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 52.0 5.21e-01 70.0% 70.0%
4395758 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.76 52.0 4.94e-01 70.0% 61.3%
3975152 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.76 56.0 5.09e-01 82.9% 60.0%
4214308 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.75 54.0 5.07e-01 75.7% 65.9%
5041148 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 51.0 5.14e-01 70.0% 70.0%
2759 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.74 53.0 5.54e-01 75.7% 89.2%
3981547 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.73 54.0 4.88e-01 82.9% 57.9%
4458444 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.72 52.0 4.70e-01 75.7% 57.9%
4979704 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 46.0 4.95e-01 70.0% 76.7%
4952807 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.72 48.0 4.75e-01 70.0% 65.3%
4933571 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 47.0 3.94e-01 70.0% 41.7%
4530655 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 63.0 5.57e-01 100.0% 88.0%
4991883 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 46.0 3.83e-01 70.0% 41.7%
4968115 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 48.0 4.88e-01 75.7% 74.3%
235968 138.1.1.9 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.68 48.0 4.02e-01 75.7% 46.4%
4980888 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 45.0 4.65e-01 70.0% 73.8%
5062184 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.67 47.0 4.99e-01 75.7% 85.0%
4974140 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.67 47.0 4.12e-01 71.4% 50.0%
5073937 101.1.2.899 alpha arrays › HTH › HTH › winged helix domain › Zn_Ribbon_1 0.64 46.0 3.88e-01 84.3% 46.1%
4962049 101.1.1.557 alpha arrays › HTH › HTH › Three-helical HTH › DUF7437 0.57 41.0 4.02e-01 78.6% 95.0%
D2 high residues 89-158
PDB