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AGM11768.1
Arc-VirKC292027__AGM11768.1__HCTV5-164__00163
Identity
- Accession:
- KC292027 ↗
- Protein ID:
- AGM11768.1 ↗
- Kingdom:
- archaea
Quality
62.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Thumleimavirales›
Druskaviridae›
Tredecimvirus›
Halovirus_HCTV-5
TaxID: 1273748
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 100-193
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 27.1 | 5.70e-06 | 92.5% | 83.3% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.69 | 46.0 | 5.02e-01 | 78.7% | 84.2% |
| 2e7zA01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.63 | 32.0 | 3.88e-01 | 93.6% | 77.2% |
| 2vqeC02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.62 | 29.0 | 2.90e-01 | 94.7% | 42.0% |
| 2gfoA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.61 | 43.0 | 2.91e-01 | 72.3% | 23.9% |
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.60 | 34.0 | 3.18e-01 | 72.3% | 46.8% |
| 7nadw01 | 3.40.50.12760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 33.0 | 3.16e-01 | 94.7% | 45.5% |
| 2qmlA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 38.0 | 3.04e-01 | 100.0% | 33.2% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 37.0 | 3.84e-01 | 70.2% | 76.7% |
| 2w7qB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.54 | 40.0 | 3.27e-01 | 78.7% | 85.0% |
| 4er8A00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.54 | 46.0 | 3.95e-01 | 100.0% | 75.8% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.53 | 30.0 | 3.42e-01 | 86.2% | 75.8% |
| 5chtB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 37.0 | 2.66e-01 | 72.3% | 51.3% |
| 1kf6A04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.52 | 20.0 | 2.84e-01 | 70.2% | 80.0% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 35.0 | 2.55e-01 | 71.3% | 25.6% |
| 8bs9A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 35.0 | 2.57e-01 | 73.4% | 44.0% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4026479 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.71 | 66.0 | 5.86e-01 | 100.0% | 73.1% |
| 5074648 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.69 | 46.0 | 5.07e-01 | 78.7% | 85.3% |
| 4151900 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.68 | 43.0 | 3.67e-01 | 83.0% | 41.0% |
| 3287357 | 3115.3.1.0 ↗ | a+b two layers › GP2-like › P56 › P56 | 0.67 | 42.0 | 5.14e-01 | 70.2% | 100.0% |
| 4951473 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.67 | 43.0 | 5.13e-01 | 70.2% | 98.4% |
| 5000510 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.65 | 44.0 | 4.89e-01 | 87.2% | 88.0% |
| 5010552 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.62 | 46.0 | 4.12e-01 | 78.7% | 97.7% |
| 4153628 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.61 | 29.0 | 2.80e-01 | 94.7% | 38.2% |
| 3518607 | 10.32.1.68 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glce_b_sandwich | 0.60 | 41.0 | 3.41e-01 | 70.2% | 57.6% |
| 3249540 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.59 | 29.0 | 2.79e-01 | 93.6% | 39.1% |
| 4930955 | 7099.1.1.1 ↗ | a+b complex topology › VP5 N-terminal domain › VP5 N-terminal domain › VP5 N-terminal domain › Viral_env_HRPV | 0.58 | 44.0 | 2.96e-01 | 79.8% | 30.8% |
| 4960416 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 33.0 | 3.42e-01 | 70.2% | 59.6% |
| 3614286 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.57 | 39.0 | 2.73e-01 | 72.3% | 24.7% |
| 3785778 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.56 | 39.0 | 2.74e-01 | 72.3% | 27.6% |
| 4979507 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.55 | 41.0 | 3.48e-01 | 76.6% | 59.1% |
| 3991745 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.54 | 44.0 | 4.57e-01 | 96.8% | 97.6% |
| 3929359 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.54 | 43.0 | 4.14e-01 | 87.2% | 86.2% |
| 3864688 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.53 | 37.0 | 2.55e-01 | 72.3% | 24.1% |
| 4943252 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.53 | 41.0 | 3.60e-01 | 84.0% | 62.8% |
| 3179039 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.52 | 36.0 | 2.46e-01 | 71.3% | 20.6% |
| 3940760 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.52 | 36.0 | 2.55e-01 | 71.3% | 25.2% |
| 3800852 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.52 | 35.0 | 2.45e-01 | 71.3% | 21.1% |
| 5039496 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.52 | 31.0 | 3.18e-01 | 100.0% | 61.1% |
| 3929391 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 42.0 | 4.00e-01 | 89.4% | 85.5% |
| 3913807 | 219.1.1.112 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 | 0.51 | 35.0 | 2.56e-01 | 71.3% | 28.6% |
| 3585855 | 382.1.1.3 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp | 0.51 | 35.0 | 3.53e-01 | 87.2% | 70.5% |
| 3991465 | 304.28.1.9 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Patched | 0.51 | 41.0 | 2.47e-01 | 91.5% | 58.1% |
| 3928432 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 40.0 | 4.01e-01 | 87.2% | 92.0% |
| 3529004 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.50 | 35.0 | 2.47e-01 | 71.3% | 25.8% |
| 3479667 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.50 | 34.0 | 2.38e-01 | 71.3% | 20.6% |